RchiOBHm_Chr3g0478271

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000414
Physical Location & Seq
Forward (+)
24100328 .. 24101826
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGAGTTTGATTCTGAACAAGCAGCTTATGACTTCTACAATAGATATAGAGGAAAAAAGGGGTTTAGTATTAGAAGGGAGACTCATGGTAAGAATAAAAGAACAAAAGAACTCACTTCAAGATTATTTGTTTGCTGTAAGGAAGGTATTCGATCCAAAGATAACAGGGATTACATGATCAGAAAACCCAGAGCAGAGACAAGAACAGGTTGCGGTGCTCAACTCTGTATTAAATTGAATAGGAGGAACAATAAGTTCTTTGTTACCCATTTTGTTGAAGAGCACAATCATCCTCTTGTGGGGAAAGAATATCCTAGGAGTTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

109

Amino Acids

13.02

Weight (kDa)

9.92

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 11 - 100 1.1e-23 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 3 cut(s) 120, 238, 278
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw21I GWGCWC 2 cut(s) 220, 285
Alw26I GTCTC 2 cut(s) 74, 191
AlwI GGATC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 147
AspA2I CCTAGG 1 cut(s) 314
AvrII CCTAGG 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 220, 285
BbvI GCAGC 1 cut(s) 35
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 74, 191
BfaI CTAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 24
BlnI CCTAGG 1 cut(s) 314
BlsI GCNGC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 220, 285
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 74, 191
Bsp1286I GDGCHC 2 cut(s) 220, 285
Bsp143I GATC 2 cut(s) 152, 177
BspACI CCGC 1 cut(s) 213
BspPI GGATC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 2 cut(s) 152, 177
BssT1I CCWWGG 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 273
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 2 cut(s) 155, 180
BstMAI GTCTC 2 cut(s) 74, 191
BstMBI GATC 2 cut(s) 152, 177
BstV1I GCAGC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 289
CviAII CATG 2 cut(s) 86, 175
CviJI RGCY 1 cut(s) 26
CviKI_1 RGCY 1 cut(s) 26
DpnI GATC 2 cut(s) 154, 179
DpnII GATC 2 cut(s) 152, 177
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 2 cut(s) 89, 178
FaiI YATR 4 cut(s) 30, 48, 87, 176
FatI CATG 2 cut(s) 85, 174
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 24
Hin1II CATG 2 cut(s) 89, 178
HinfI GANTC 2 cut(s) 11, 82
Hpy188I TCNGA 2 cut(s) 16, 182
Hpy188III TCNNGA 1 cut(s) 120
HpyAV CCTTC 2 cut(s) 69, 137
Hsp92II CATG 2 cut(s) 89, 178
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 2 cut(s) 152, 177
LguI GCTCTTC 1 cut(s) 273
LpnPI CCDG 3 cut(s) 151, 192, 202
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 262
MalI GATC 2 cut(s) 154, 179
MboI GATC 2 cut(s) 152, 177
MboII GAAGA 1 cut(s) 290
MhlI GDGCHC 2 cut(s) 220, 285
MluCI AATT 1 cut(s) 233
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 3 cut(s) 44, 237, 303
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 2 cut(s) 231, 328
NdeII GATC 2 cut(s) 152, 177
NlaIII CATG 2 cut(s) 89, 178
PciSI GCTCTTC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 231, 328
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 152, 177
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 2 cut(s) 220, 285
SetI ASST 3 cut(s) 28, 148, 211
SgeI CNNG 9 cut(s) 32, 98, 132, 178, 187, 201, 213, 219, 308
Sse9I AATT 1 cut(s) 233
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 314
TaqI TCGA 1 cut(s) 151
TasI AATT 1 cut(s) 233
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 231, 328
Tru9I TTAA 2 cut(s) 231, 328
TseI GCWGC 1 cut(s) 23
XmaJI CCTAGG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.