FvH4_2g11330

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000429
Physical Location & Seq
Reverse (-)
9839806 .. 9842304
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11330.t2

Sequence Viewer

Length: 777 bp
ATGGAGAAGCTTGTTTCTAGCTGGTACAATAATGTTCAACCCTTGCCGGAGACTTACATATTCCCACCCGAAGCAAGACCAGGGAAGCTTAGCAATCTTCCTTCATCTGATAACATTCCAGTTATTGATCTTGGTGGGGGTGGAGCACAAGGTCATGATCGCACTCGTATAGTTGAGCAAGTACTAGGTGCTAGCGAAGAGTTCGGATTTTTTCAGGTAATCAACCATGGCATATCAGAAAACTTGTTGAATGACACCATGGATGTGTTCAGGGAGTTTTTTGCGTTGCCTCCAGAGGACAAGGCAAGCTTAATCTCTGAGGACCCCAATAAACTCTGCAGGCTCATAACTAGCACTGGAAATTATGATAGGGAGAATGTTCATCTTTGGCGCGATGCTCTCCGACACCCTTGTCATCCTTTAGAGAAATTCATTCCGCTTTGGCCTCAACAACCGCTTAAATATCGAGAGCATGTTGGCAAATGTTCCACCCAAGTGAGGAAAGTAGCTTTGAGCATTTTGGAGTTGATCAGTGAAGGACTTGGGGTTGGATATGGGCACTTCAATGATGAACTAAGCCAAGAGACTCTACTGTCAGTTAATTACTATCCACCTTGCCCAGACCCAAGTTTGACATTAGAAATAACTAAACACTGTGACCCAAACCTCATCACAATTTTACTTCAAGGGGATGTACATGGCCTTCAGGTTTTTAAAGAGGGGGAATGGATTGGTGTGGAACCTCTTCCACATGGACTAGTGGTTAACATAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

259

Amino Acids

28.91

Weight (kDa)

5.08

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 39 - 150 2.7e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 175 - 245 3.8e-13 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 411, 592
AccII CGCG 1 cut(s) 393
AciI CCGC 2 cut(s) 437, 455
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 689
AfaI GTAC 3 cut(s) 26, 183, 696
AfiI CCNNNNNNNGG 1 cut(s) 498
AgsI TTSAA 4 cut(s) 38, 250, 565, 686
AhlI ACTAGT 1 cut(s) 757
AjnI CCWGG 1 cut(s) 79
AleI CACNNNNGTG 1 cut(s) 494
AluBI AGCT 5 cut(s) 10, 21, 88, 309, 509
AluI AGCT 5 cut(s) 10, 21, 88, 309, 509
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 2 cut(s) 44, 578
AoxI GGCC 2 cut(s) 443, 700
ApoI RAATTY 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 322
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 561
BarI GAAGNNNNNNTAC 2 cut(s) 687, 719
Bbv12I GWGCWC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 44, 578
BcuI ACTAGT 1 cut(s) 757
BfaI CTAG 6 cut(s) 18, 185, 192, 351, 758, 775
BfmI CTRYAG 1 cut(s) 337
BlpI GCTNAGC 1 cut(s) 89
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 2 cut(s) 324, 741
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 385
BmtI GCTAGC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 80, 226, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse1I ACTGG 2 cut(s) 119, 361
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 80, 226, 258
BseGI GGATG 3 cut(s) 268, 415, 697
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 119, 361
BseSI GKGCMC 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 2 cut(s) 445, 702
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 498
BsmAI GTCTC 2 cut(s) 44, 578
BsnI GGCC 2 cut(s) 445, 702
Bsp1286I GDGCHC 2 cut(s) 148, 561
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 3 cut(s) 127, 157, 528
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp19I CCATGG 2 cut(s) 226, 258
BspACI CCGC 2 cut(s) 437, 455
BspANI GGCC 2 cut(s) 445, 702
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 324, 741
BspMAI CTGCAG 1 cut(s) 341
BspOI GCTAGC 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 694
BsrI ACTGG 2 cut(s) 119, 361
BssECI CCNNGG 3 cut(s) 80, 226, 258
BssMI GATC 3 cut(s) 127, 157, 528
BssT1I CCWWGG 2 cut(s) 226, 258
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 594, 656
Bst6I CTCTTC 2 cut(s) 192, 750
BstAUI TGTACA 1 cut(s) 694
BstC8I GCNNGC 3 cut(s) 193, 307, 341
BstDEI CTNAG 3 cut(s) 89, 318, 575
BstDSI CCRYGG 2 cut(s) 226, 258
BstF5I GGATG 3 cut(s) 268, 415, 697
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 3 cut(s) 130, 160, 531
BstMAI GTCTC 2 cut(s) 44, 578
BstMBI GATC 3 cut(s) 127, 157, 528
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 1 cut(s) 393
BsuRI GGCC 2 cut(s) 445, 702
BtgI CCRYGG 2 cut(s) 226, 258
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 3 cut(s) 268, 415, 697
BtsIMutI CAGTG 3 cut(s) 354, 538, 652
Cac8I GCNNGC 3 cut(s) 193, 307, 341
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 3 cut(s) 25, 182, 695
CviAII CATG 6 cut(s) 155, 227, 259, 473, 698, 752
CviQI GTAC 3 cut(s) 25, 182, 695
DdeI CTNAG 3 cut(s) 89, 318, 575
DpnI GATC 3 cut(s) 129, 159, 530
DpnII GATC 3 cut(s) 127, 157, 528
DraI TTTAAA 1 cut(s) 715
DrdI GACNNNNNNGTC 2 cut(s) 411, 592
DseDI GACNNNNNNGTC 2 cut(s) 411, 592
Eam1104I CTCTTC 2 cut(s) 192, 750
EarI CTCTTC 2 cut(s) 192, 750
Eco130I CCWWGG 2 cut(s) 226, 258
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 2 cut(s) 226, 258
ErhI CCWWGG 2 cut(s) 226, 258
FaeI CATG 6 cut(s) 158, 230, 262, 476, 701, 755
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 6 cut(s) 154, 226, 258, 472, 697, 751
FbaI TGATCA 1 cut(s) 528
FokI GGATG 3 cut(s) 275, 402, 704
FspBI CTAG 6 cut(s) 18, 185, 192, 351, 758, 775
GlaI GCGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 445, 702
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 393
Hin1II CATG 6 cut(s) 158, 230, 262, 476, 701, 755
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 3 cut(s) 8, 86, 307
HinfI GANTC 1 cut(s) 586
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 766
Hpy188I TCNGA 5 cut(s) 109, 206, 238, 319, 404
Hpy188III TCNNGA 3 cut(s) 155, 293, 467
Hpy8I GTNNAC 1 cut(s) 766
HpyAV CCTTC 3 cut(s) 111, 530, 713
HpyCH4III ACNGT 2 cut(s) 594, 656
HpyCH4V TGCA 1 cut(s) 339
HpyF3I CTNAG 3 cut(s) 89, 318, 575
Hsp92II CATG 6 cut(s) 158, 230, 262, 476, 701, 755
HspAI GCGC 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 528
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 3 cut(s) 127, 157, 528
LmnI GCTCC 1 cut(s) 143
LweI GCATC 1 cut(s) 385
MaeI CTAG 6 cut(s) 18, 185, 192, 351, 758, 775
MaeIII GTNAC 1 cut(s) 656
MalI GATC 3 cut(s) 129, 159, 530
MboI GATC 3 cut(s) 127, 157, 528
MboII GAAGA 3 cut(s) 89, 209, 737
MhlI GDGCHC 2 cut(s) 148, 561
MluCI AATT 4 cut(s) 361, 428, 601, 675
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 2 cut(s) 427, 529
MnlI CCTC 8 cut(s) 289, 300, 313, 456, 492, 677, 712, 753
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 5 cut(s) 311, 459, 600, 714, 765
MslI CAYNNNNRTG 3 cut(s) 263, 494, 564
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 393
NcoI CCATGG 2 cut(s) 226, 258
NdeII GATC 3 cut(s) 127, 157, 528
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 6 cut(s) 158, 230, 262, 476, 701, 755
NlaIV GGNNCC 2 cut(s) 324, 741
NmuCI GTSAC 1 cut(s) 656
NspI RCATGY 1 cut(s) 476
OliI CACNNNNGTG 1 cut(s) 494
PagI TCATGA 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 744
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 324, 741
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
PstI CTGCAG 1 cut(s) 341
RsaI GTAC 3 cut(s) 26, 183, 696
RsaNI GTAC 3 cut(s) 25, 182, 695
RseI CAYNNNNRTG 3 cut(s) 263, 494, 564
SaqAI TTAA 5 cut(s) 311, 459, 600, 714, 765
Sau3AI GATC 3 cut(s) 127, 157, 528
Sau96I GGNCC 1 cut(s) 322
ScaI AGTACT 1 cut(s) 183
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 148, 561
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 3 cut(s) 263, 494, 564
SpeI ACTAGT 1 cut(s) 757
Sse9I AATT 4 cut(s) 361, 428, 601, 675
SsiI CCGC 2 cut(s) 437, 455
SspMI CTAG 6 cut(s) 18, 185, 192, 351, 758, 775
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 2 cut(s) 226, 258
TaaI ACNGT 2 cut(s) 594, 656
TaqI TCGA 1 cut(s) 466
TasI AATT 4 cut(s) 361, 428, 601, 675
TatI WGTACW 2 cut(s) 181, 694
Tru1I TTAA 5 cut(s) 311, 459, 600, 714, 765
Tru9I TTAA 5 cut(s) 311, 459, 600, 714, 765
TscAI CASTG 3 cut(s) 361, 538, 659
TseFI GTSAC 1 cut(s) 656
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 93, 371, 421, 585
TspRI CASTG 3 cut(s) 361, 538, 659
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 6 cut(s) 18, 185, 192, 351, 758, 775
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.