pycom05g18630

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
21514273 .. 21516253
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g18630.4

Sequence Viewer

Length: 1041 bp
ATGTACCTGAATCTTACATATATATTACCCCTTGAAACTAGACCTGGGAATGTACAAGTTTCACTATTTGATAGCATCCCAGTTATTGATTTTCTTGGCACTGACAAACCACAGCTGATCAGGCAGATCATTGAAGCTGCCCGAGAATTTGGGTTTTTCCAGCCTTCTGAAGACAAAGCAAGCCTCTATTCTGAAGATGCTAAAAAATGTTGCAGACTATACACCGGCATCGACTATGTGCAGGAGCAGAAACATTACTGGAGAGACAGTTTAAGACACGCTTGTCATCCTCTGGAGGAATACATCGATTTCTGGCCTGAGAAACCGGCTAAATATCGGTATTTTAATCACTTCCCTATAGTTATTCTACGCTTACAAACATTTTCAAAAATACTTTGTTTTCCAGAAGTGACGGGAAATTATTATGTGGAGGTGAGAAAGCTGGGGCTTTGTCTTCTGGATCTAATTTGTGAAGGGGTAGGACTCGAAACTGGATTTTTTGAGGGTGAACTGAGCCAAGTGCAAGTGATGGCTGCAAATAATTACCCACCATGTCCAGACCCAAGTTTAACCTTGGGATTACCTAAACACTTTAATATTAATCTCATAACTATTCTTCTCCAAGAACAAGTTAATGGCCTTCAAGTTTTGAAAGATGAGCAGTGGCTGGCTGTTGAGCCTGTCCCTAATGCATTTGTGGTCAGTATTGGTCACATGTTACAGGTACTTCACCCACATATATTACATGTTTATCTGAGAAGTTTCCCGTACGGGAGGTTCATTTTCATCATGAACATTATTAGCAGTGGGAATCTGAGCAGTGCTGACCACAGAGTTGTGACAGATAGTAAGGTTTCAAGGACATCAGTCGGATGCTTCATAAATACTTCTAGCACCTGCCGTATTGAACCTGCAAAAGCACTTATTAAGGACAGTTCTCCACTCTACAGAGCTTTTATATATAAAGATTTTGCTAGCACCTACATACAAGGTACTCTTGATGGAGTAGCGCCGCTCGACCTTTATAAGCTCCAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

347

Amino Acids

39.5

Weight (kDa)

6.07

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
AarI CACCTGC 1 cut(s) 905
AasI GACNNNNNNGTC 1 cut(s) 282
Acc36I ACCTGC 2 cut(s) 905, 919
AccBSI CCGCTC 1 cut(s) 1015
AciI CCGC 1 cut(s) 1013
AclWI GGATC 1 cut(s) 468
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 2 cut(s) 189, 213
AfaI GTAC 5 cut(s) 5, 54, 726, 770, 994
AflIII ACRYGT 2 cut(s) 714, 745
AgsI TTSAA 7 cut(s) 35, 134, 387, 644, 652, 858, 908
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 5 cut(s) 115, 137, 442, 953, 1030
AluI AGCT 5 cut(s) 115, 137, 442, 953, 1030
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 468
AlwNI CAGNNNCTG 1 cut(s) 667
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 2 cut(s) 314, 637
ApeKI GCWGC 2 cut(s) 137, 533
ApoI RAATTY 1 cut(s) 146
AseI ATTAAT 1 cut(s) 600
AspLEI GCGC 1 cut(s) 1012
AsuHPI GGTGA 3 cut(s) 445, 518, 722
AsuNHI GCTAGC 1 cut(s) 974
AvaI CYCGRG 1 cut(s) 141
BbsI GAAGAC 2 cut(s) 177, 446
BbvI GCAGC 2 cut(s) 124, 520
BccI CCATC 2 cut(s) 523, 995
BceAI ACGGC 1 cut(s) 885
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 3 cut(s) 39, 891, 975
BfmI CTRYAG 2 cut(s) 357, 946
BfoI RGCGCY 1 cut(s) 1013
BfuAI ACCTGC 2 cut(s) 905, 919
BisI GCNGC 3 cut(s) 138, 534, 1013
BlsI GCNGC 3 cut(s) 139, 535, 1014
Bme1390I CCNGG 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 4 cut(s) 84, 187, 237, 863
BmtI GCTAGC 1 cut(s) 978
BmuI ACTGGG 1 cut(s) 74
BoxI GACNNNNGTC 1 cut(s) 866
BpiI GAAGAC 2 cut(s) 177, 446
BpmI CTGGAG 2 cut(s) 280, 314
Bsa29I ATCGAT 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 44, 573
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bse118I RCCGGY 2 cut(s) 224, 325
Bse1I ACTGG 3 cut(s) 80, 263, 496
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 44, 573
BseGI GGATG 3 cut(s) 75, 286, 878
BseMII CTCAG 4 cut(s) 309, 503, 746, 806
BseNI ACTGG 3 cut(s) 80, 263, 496
BseXI GCAGC 2 cut(s) 124, 520
BseYI CCCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 2 cut(s) 316, 639
BshVI ATCGAT 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 2 cut(s) 225, 326
BsiWI CGTACG 1 cut(s) 768
BslFI GGGAC 1 cut(s) 668
BsmAI GTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 2 cut(s) 316, 639
BsoBI CYCGRG 1 cut(s) 141
Bsp1407I TGTACA 1 cut(s) 52
Bsp143I GATC 3 cut(s) 117, 126, 460
BspACI CCGC 1 cut(s) 1013
BspANI GGCC 2 cut(s) 316, 639
BspCNI CTCAG 4 cut(s) 310, 504, 747, 807
BspDI ATCGAT 1 cut(s) 306
BspHI TCATGA 1 cut(s) 789
BspMI ACCTGC 2 cut(s) 905, 919
BspOI GCTAGC 1 cut(s) 978
BspPI GGATC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 1015
BsrFI RCCGGY 2 cut(s) 224, 325
BsrGI TGTACA 1 cut(s) 52
BsrI ACTGG 3 cut(s) 80, 263, 496
BssAI RCCGGY 2 cut(s) 224, 325
BssECI CCNNGG 2 cut(s) 44, 573
BssMI GATC 3 cut(s) 117, 126, 460
BssT1I CCWWGG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 269, 935
BstAUI TGTACA 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 181, 669, 976
BstDEI CTNAG 4 cut(s) 318, 512, 755, 815
BstF5I GGATG 3 cut(s) 75, 286, 878
BstH2I RGCGCY 1 cut(s) 1013
BstHHI GCGC 1 cut(s) 1012
BstKTI GATC 3 cut(s) 120, 129, 463
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 3 cut(s) 117, 126, 460
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 2 cut(s) 718, 749
BstPAI GACNNNNGTC 1 cut(s) 866
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 357, 946
BstV1I GCAGC 2 cut(s) 124, 520
BstV2I GAAGAC 2 cut(s) 177, 446
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 2 cut(s) 316, 639
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 3 cut(s) 75, 286, 878
BtsI GCAGTG 3 cut(s) 668, 811, 826
BtsIMutI CAGTG 4 cut(s) 99, 668, 811, 826
BveI ACCTGC 2 cut(s) 905, 919
Cac8I GCNNGC 3 cut(s) 181, 669, 976
CaiI CAGNNNCTG 1 cut(s) 667
CciI TCATGA 1 cut(s) 789
CfoI GCGC 1 cut(s) 1012
Cfr10I RCCGGY 2 cut(s) 224, 325
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 5 cut(s) 4, 53, 725, 769, 993
CviAII CATG 4 cut(s) 552, 715, 746, 790
CviQI GTAC 5 cut(s) 4, 53, 725, 769, 993
DdeI CTNAG 4 cut(s) 318, 512, 755, 815
DpnI GATC 3 cut(s) 119, 128, 462
DpnII GATC 3 cut(s) 117, 126, 460
DrdI GACNNNNNNGTC 1 cut(s) 282
DseDI GACNNNNNNGTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 573
Eco57I CTGAAG 2 cut(s) 189, 213
Eco88I CYCGRG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 4 cut(s) 555, 718, 749, 793
FalI AAGNNNNNCTT 4 cut(s) 265, 297, 981, 1013
FaqI GGGAC 1 cut(s) 668
FatI CATG 4 cut(s) 551, 714, 745, 789
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 138, 534, 1013
FokI GGATG 3 cut(s) 62, 273, 885
Fsp4HI GCNGC 3 cut(s) 138, 534, 1013
FspBI CTAG 3 cut(s) 39, 891, 975
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 3 cut(s) 138, 534, 1013
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 2 cut(s) 280, 314
HaeII RGCGCY 1 cut(s) 1013
HaeIII GGCC 2 cut(s) 316, 639
HapII CCGG 2 cut(s) 225, 326
HhaI GCGC 1 cut(s) 1012
Hin1II CATG 4 cut(s) 555, 718, 749, 793
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HinfI GANTC 3 cut(s) 10, 483, 811
HpaII CCGG 2 cut(s) 225, 326
HphI GGTGA 3 cut(s) 445, 518, 722
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 5 cut(s) 169, 193, 756, 816, 872
Hpy188III TCNNGA 6 cut(s) 293, 404, 458, 557, 790, 998
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 3 cut(s) 174, 467, 650
HpyCH4III ACNGT 2 cut(s) 269, 935
HpyCH4V TGCA 6 cut(s) 213, 241, 523, 536, 692, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 4 cut(s) 318, 512, 755, 815
Hsp92II CATG 4 cut(s) 555, 718, 749, 793
HspAI GCGC 1 cut(s) 1010
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 117, 126, 460
LmnI GCTCC 2 cut(s) 244, 1035
Lsp1109I GCAGC 2 cut(s) 124, 520
LweI GCATC 4 cut(s) 84, 187, 237, 863
MaeI CTAG 3 cut(s) 39, 891, 975
MaeIII GTNAC 4 cut(s) 409, 710, 717, 838
MalI GATC 3 cut(s) 119, 128, 462
MbiI CCGCTC 1 cut(s) 1015
MboI GATC 3 cut(s) 117, 126, 460
MboII GAAGA 4 cut(s) 182, 206, 446, 608
MflI RGATCY 1 cut(s) 460
MluCI AATT 4 cut(s) 146, 418, 465, 541
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 850
MnlI CCTC 6 cut(s) 194, 289, 300, 424, 496, 768
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 8 cut(s) 272, 345, 569, 594, 600, 633, 927, 1039
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 2 cut(s) 225, 326
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 3 cut(s) 117, 126, 460
NheI GCTAGC 1 cut(s) 974
NlaIII CATG 4 cut(s) 555, 718, 749, 793
NmuCI GTSAC 3 cut(s) 409, 710, 838
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 2 cut(s) 718, 749
PagI TCATGA 1 cut(s) 789
PaqCI CACCTGC 1 cut(s) 905
PciI ACATGT 2 cut(s) 714, 745
PfeI GAWTC 2 cut(s) 10, 811
Pfl23II CGTACG 1 cut(s) 768
PkrI GCNGC 3 cut(s) 139, 535, 1014
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PscI ACATGT 2 cut(s) 714, 745
PshAI GACNNNNGTC 1 cut(s) 866
PshBI ATTAAT 1 cut(s) 600
PsiI TTATAA 1 cut(s) 1026
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 1 cut(s) 43
PspLI CGTACG 1 cut(s) 768
PsrI GAACNNNNNNTAC 2 cut(s) 761, 793
PstNI CAGNNNCTG 1 cut(s) 667
PsuI RGATCY 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 5 cut(s) 5, 54, 726, 770, 994
RsaNI GTAC 5 cut(s) 4, 53, 725, 769, 993
SaqAI TTAA 8 cut(s) 272, 345, 569, 594, 600, 633, 927, 1039
SatI GCNGC 3 cut(s) 138, 534, 1013
Sau3AI GATC 3 cut(s) 117, 126, 460
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 1 cut(s) 45
SfaNI GCATC 4 cut(s) 84, 187, 237, 863
SfcI CTRYAG 2 cut(s) 357, 946
Sse9I AATT 4 cut(s) 146, 418, 465, 541
SsiI CCGC 1 cut(s) 1013
SspI AATATT 1 cut(s) 598
SspMI CTAG 3 cut(s) 39, 891, 975
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 2 cut(s) 269, 935
TaqI TCGA 4 cut(s) 231, 306, 486, 1017
TasI AATT 4 cut(s) 146, 418, 465, 541
TatI WGTACW 1 cut(s) 52
TauI GCSGC 1 cut(s) 1015
TfiI GAWTC 2 cut(s) 10, 811
Tru1I TTAA 8 cut(s) 272, 345, 569, 594, 600, 633, 927, 1039
Tru9I TTAA 8 cut(s) 272, 345, 569, 594, 600, 633, 927, 1039
TscAI CASTG 4 cut(s) 106, 668, 811, 826
TseFI GTSAC 3 cut(s) 409, 710, 838
TseI GCWGC 2 cut(s) 137, 533
Tsp45I GTSAC 3 cut(s) 409, 710, 838
TspDTI ATGAA 4 cut(s) 769, 775, 806, 868
TspRI CASTG 4 cut(s) 106, 668, 811, 826
VspI ATTAAT 1 cut(s) 600
XapI RAATTY 1 cut(s) 146
XceI RCATGY 2 cut(s) 718, 749
XspI CTAG 3 cut(s) 39, 891, 975
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.