RchiOBHm_Chr6g0288461

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000429
Physical Location & Seq
Forward (+)
51720232 .. 51722406
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25882

Sequence Viewer

Length: 522 bp
ATGGTCTTCAAAGATGAGCAGTGGTTGGTTGTTGAGCCTGTCCCTGATGCCTTTGTGGTTAATATAGGCCACACATTACAGATTATCAGTAATGGGAAGCTAAGCAGTGCTGAGCACAGAGTTGTAACAAACAAAAAGATTTTGAGGATGTCAGTGGTCAGCTTCATCATCCTTCCGGAAACTGCCATATTAAACCTGCAAAAGCACTTCTTGATAAGGACTGCAAGAGGTAGTTGGAAGTTATTCTGTGGAGTGAGGAAGCTGAGTTTGTGTCTTTTGGATCTAATCACTGAAGGATTGGAACTTGAATATGAGTTTTTTGAGGGTGAACTTAGCCAAGTGCAAATAATGGGTATGAACTATTACCAACCATGCCCGGACCCAACATTAACCTTGGGATTACTTAAACATTATGATGGAAATCTCTTAACTTTTCTTCTACAAGAACAAGTTCATGACCTTCAAGTCTTCAAATTAAGGAGCAATGGTTGGCTGTTGATCCTGTCCCTCATGCCTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

173

Amino Acids

19.8

Weight (kDa)

6.19

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 2 - 56 1.1e-13 2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy PF03171 115 - 165 2e-10 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 204
AccIII TCCGGA 1 cut(s) 175
AclWI GGATC 2 cut(s) 288, 493
AcuI CTGAAG 1 cut(s) 312
AgsI TTSAA 4 cut(s) 10, 308, 464, 472
AluBI AGCT 3 cut(s) 100, 162, 262
AluI AGCT 3 cut(s) 100, 162, 262
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 2 cut(s) 288, 493
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 67
Asp700I GAANNNNTTC 2 cut(s) 242, 450
AspS9I GGNCC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 377
BfuAI ACCTGC 1 cut(s) 204
BlpI GCTNAGC 2 cut(s) 101, 111
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 460
Bpu1102I GCTNAGC 2 cut(s) 101, 111
BpuMI CCSGG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 153, 168
BseJI GATNNNNATC 1 cut(s) 420
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 102, 254
BshFI GGCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 2 cut(s) 176, 377
BslFI GGGAC 2 cut(s) 26, 490
BsmFI GGGAC 2 cut(s) 26, 490
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 117
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 2 cut(s) 280, 498
Bsp1720I GCTNAGC 2 cut(s) 101, 111
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 103, 255
BspEI TCCGGA 1 cut(s) 175
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 2 cut(s) 288, 493
BsrDI GCAATG 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 2 cut(s) 280, 498
BssT1I CCWWGG 1 cut(s) 393
BstDEI CTNAG 4 cut(s) 101, 111, 263, 332
BstF5I GGATG 2 cut(s) 153, 168
BstKTI GATC 2 cut(s) 283, 501
BstMBI GATC 2 cut(s) 280, 498
BstSCI CCNGG 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 2 cut(s) 153, 168
BtsI GCAGTG 2 cut(s) 26, 112
BtsIMutI CAGTG 4 cut(s) 26, 112, 159, 288
BveI ACCTGC 1 cut(s) 204
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 379
CviAII CATG 3 cut(s) 372, 455, 511
CviJI RGCY 7 cut(s) 37, 69, 100, 162, 262, 336, 493
CviKI_1 RGCY 7 cut(s) 37, 69, 100, 162, 262, 336, 493
DdeI CTNAG 4 cut(s) 101, 111, 263, 332
DpnI GATC 2 cut(s) 282, 500
DpnII GATC 2 cut(s) 280, 498
DrdI GACNNNNNNGTC 1 cut(s) 464
DseDI GACNNNNNNGTC 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 3 cut(s) 375, 458, 514
FaiI YATR 8 cut(s) 65, 188, 312, 356, 373, 414, 456, 512
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 2 cut(s) 26, 490
FatI CATG 3 cut(s) 371, 454, 510
FokI GGATG 2 cut(s) 155, 160
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 176, 377
Hin1II CATG 3 cut(s) 375, 458, 514
HpaII CCGG 2 cut(s) 176, 377
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 329
Hpy188III TCNNGA 3 cut(s) 176, 211, 455
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 182, 287, 470
HpyCH4V TGCA 3 cut(s) 199, 224, 343
HpyF3I CTNAG 4 cut(s) 101, 111, 263, 332
Hsp92II CATG 3 cut(s) 375, 458, 514
Kpn2I TCCGGA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 280, 498
LmnI GCTCC 1 cut(s) 480
LpnPI CCDG 6 cut(s) 51, 57, 189, 209, 390, 515
LweI GCATC 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 282, 500
MboI GATC 2 cut(s) 280, 498
MboII GAAGA 2 cut(s) 428, 460
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 5 cut(s) 138, 221, 249, 316, 518
MroI TCCGGA 1 cut(s) 175
MroXI GAANNNNTTC 2 cut(s) 242, 450
MseI TTAA 6 cut(s) 60, 191, 389, 405, 428, 476
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 2 cut(s) 176, 377
MspR9I CCNGG 1 cut(s) 377
NciI CCSGG 1 cut(s) 377
NdeII GATC 2 cut(s) 280, 498
NlaIII CATG 3 cut(s) 375, 458, 514
NlaIV GGNNCC 1 cut(s) 381
PagI TCATGA 1 cut(s) 454
PdmI GAANNNNTTC 2 cut(s) 242, 450
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 379
PsuI RGATCY 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 6 cut(s) 60, 191, 389, 405, 428, 476
Sau3AI GATC 2 cut(s) 280, 498
Sau96I GGNCC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 1 cut(s) 117
SetI ASST 7 cut(s) 102, 164, 198, 232, 264, 395, 462
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 393
TasI AATT 1 cut(s) 473
Tru1I TTAA 6 cut(s) 60, 191, 389, 405, 428, 476
Tru9I TTAA 6 cut(s) 60, 191, 389, 405, 428, 476
TscAI CASTG 4 cut(s) 26, 112, 159, 295
TspDTI ATGAA 3 cut(s) 154, 371, 443
TspRI CASTG 4 cut(s) 26, 112, 159, 295
VpaK11BI GGWCC 1 cut(s) 379
XmnI GAANNNNTTC 2 cut(s) 242, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.