Rmu_co8451481.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8451481.1
OG0000429
Physical Location & Seq
Forward (+)
1 .. 1272
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8451481.1_g000001.1.cds

Sequence Viewer

Length: 834 bp
ttgatcaatcacggggttgaagacaatttgctgcatgaggtattggacgtggccaacgagttctttgagcagccttatgaagacaaggcaagcatgtattctgaagatgttgagcaaagttgtagactatacaccagcattgattataacaaagagaaggtgcatttttggagagacaatttgagacacccttgtcatcccttagagcaacacatccatttctggcctcagaaaccgcctcaatatcgggaggtggttggaagttattcagtggaggcaaggaagctgagtatattgcttttggatcttattggagaagggttgggacttgaatctgaatttttcggagatgaacttaccgaagtccaactgataggcataaactattaccctccttgtccagacccgagcttaaccttagggttaccaaaacatagtgatgttaacctcatcactcttcttctccaaggagaggaagttcatggtcttcaggttttgaaagatgggcaatggttggctgttgagcctgtccctaatgcctttgtggttaacataggccacactttacagatcatcagtaatgggaagctaggcagcgccgagcacagagtcatgacaaatgaaaaggtttcccgtaccacagtgggtagcttcatccatccttccagcaattaccttgttgagcctgcaaaagctctactagatagggactgcagtagctctccactctttagagctttcgtgtacaaggactttgttagcacctacgtaacaaacactcatgagggagtaccaccccttgagcctcacaagatccagccacgaagtatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

277

Amino Acids

31.42

Weight (kDa)

5.24

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AasI GACNNNNNNGTC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 124
AciI CCGC 1 cut(s) 236
AclWI GGATC 2 cut(s) 312, 808
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 123, 473
AfaI GTAC 3 cut(s) 637, 746, 792
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 3 cut(s) 20, 332, 499
AjiI CACGTC 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 7 cut(s) 286, 411, 589, 651, 695, 720, 737
AluI AGCT 7 cut(s) 286, 411, 589, 651, 695, 720, 737
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 2 cut(s) 168, 178
AlwI GGATC 2 cut(s) 312, 808
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 3 cut(s) 51, 224, 556
ApeKI GCWGC 3 cut(s) 31, 70, 594
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 406
AxyI CCTNAGG 1 cut(s) 418
BalI TGGCCA 1 cut(s) 53
BbsI GAAGAC 3 cut(s) 27, 87, 479
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 3 cut(s) 18, 82, 606
BccI CCATC 2 cut(s) 497, 666
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 168, 178
BfaI CTAG 2 cut(s) 590, 701
BfmI CTRYAG 1 cut(s) 712
BfoI RGCGCY 1 cut(s) 600
BisI GCNGC 3 cut(s) 32, 71, 595
BlsI GCNGC 3 cut(s) 33, 72, 596
BmeT110I CYCGRG 1 cut(s) 406
BmgBI CACGTC 1 cut(s) 49
BpiI GAAGAC 3 cut(s) 27, 87, 479
BpuEI CTTGAG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 769
BsaJI CCNNGG 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse21I CCTNAGG 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 515
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 4 cut(s) 196, 213, 654, 658
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 2 cut(s) 242, 278
BseXI GCAGC 3 cut(s) 18, 82, 606
BshFI GGCC 3 cut(s) 53, 226, 558
BsiHKAI GWGCWC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 406
BslFI GGGAC 3 cut(s) 339, 515, 722
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 2 cut(s) 168, 178
BsmFI GGGAC 3 cut(s) 339, 515, 722
BsnI GGCC 3 cut(s) 53, 226, 558
BsoBI CYCGRG 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 606
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 4 cut(s) 3, 304, 570, 813
BspACI CCGC 1 cut(s) 236
BspANI GGCC 3 cut(s) 53, 226, 558
BspCNI CTCAG 2 cut(s) 241, 279
BspHI TCATGA 2 cut(s) 612, 781
BspMAI CTGCAG 1 cut(s) 716
BspPI GGATC 2 cut(s) 312, 808
BsrDI GCAATG 1 cut(s) 515
BsrGI TGTACA 1 cut(s) 744
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 4 cut(s) 3, 304, 570, 813
BssT1I CCWWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 1 cut(s) 462
BstAUI TGTACA 1 cut(s) 744
BstBAI YACGTR 1 cut(s) 769
BstC8I GCNNGC 2 cut(s) 91, 687
BstDEI CTNAG 4 cut(s) 202, 228, 287, 418
BstEII GGTNACC 1 cut(s) 423
BstF5I GGATG 4 cut(s) 196, 213, 654, 658
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 4 cut(s) 6, 307, 573, 816
BstMAI GTCTC 2 cut(s) 168, 178
BstMBI GATC 4 cut(s) 3, 304, 570, 813
BstNSI RCATGY 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 712
BstSNI TACGTA 1 cut(s) 769
BstV1I GCAGC 3 cut(s) 18, 82, 606
BstV2I GAAGAC 3 cut(s) 27, 87, 479
BstX2I RGATCY 2 cut(s) 304, 813
BstYI RGATCY 2 cut(s) 304, 813
Bsu36I CCTNAGG 1 cut(s) 418
BsuRI GGCC 3 cut(s) 53, 226, 558
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 4 cut(s) 196, 213, 654, 658
BtsIMutI CAGTG 2 cut(s) 276, 648
Cac8I GCNNGC 2 cut(s) 91, 687
CciI TCATGA 2 cut(s) 612, 781
CfoI GCGC 1 cut(s) 599
Csp6I GTAC 3 cut(s) 636, 745, 791
CviAII CATG 5 cut(s) 35, 94, 482, 613, 782
CviQI GTAC 3 cut(s) 636, 745, 791
DdeI CTNAG 4 cut(s) 202, 228, 287, 418
DpnI GATC 4 cut(s) 5, 306, 572, 815
DpnII GATC 4 cut(s) 3, 304, 570, 813
DrdI GACNNNNNNGTC 1 cut(s) 192
DseDI GACNNNNNNGTC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco105I TACGTA 1 cut(s) 769
Eco130I CCWWGG 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 123, 473
Eco81I CCTNAGG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 406
Eco91I GGTNACC 1 cut(s) 423
EcoO65I GGTNACC 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 5 cut(s) 38, 97, 485, 616, 785
FaqI GGGAC 3 cut(s) 339, 515, 722
FatI CATG 5 cut(s) 34, 93, 481, 612, 781
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 32, 71, 595
FokI GGATG 4 cut(s) 183, 200, 641, 645
Fsp4HI GCNGC 3 cut(s) 32, 71, 595
FspBI CTAG 2 cut(s) 590, 701
GlaI GCGC 1 cut(s) 598
GluI GCNGC 3 cut(s) 32, 71, 595
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 3 cut(s) 53, 226, 558
HhaI GCGC 1 cut(s) 599
Hin1II CATG 5 cut(s) 38, 97, 485, 616, 785
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 2 cut(s) 445, 550
HindII GTYRAC 2 cut(s) 445, 550
HinfI GANTC 2 cut(s) 332, 609
HpaI GTTAAC 2 cut(s) 445, 550
Hpy166II GTNNAC 4 cut(s) 125, 445, 550, 745
Hpy188I TCNGA 4 cut(s) 103, 231, 337, 347
Hpy188III TCNNGA 4 cut(s) 248, 401, 613, 782
Hpy8I GTNNAC 4 cut(s) 125, 445, 550, 745
HpyAV CCTTC 3 cut(s) 151, 311, 672
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 2 cut(s) 48, 768
HpyCH4V TGCA 4 cut(s) 34, 163, 689, 714
HpyF3I CTNAG 4 cut(s) 202, 228, 287, 418
HpySE526I ACGT 2 cut(s) 48, 768
Hsp92II CATG 5 cut(s) 38, 97, 485, 616, 785
HspAI GCGC 1 cut(s) 597
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 2 cut(s) 445, 550
Kzo9I GATC 4 cut(s) 3, 304, 570, 813
LpnPI CCDG 8 cut(s) 148, 208, 414, 476, 540, 679, 699, 830
Lsp1109I GCAGC 3 cut(s) 18, 82, 606
MaeI CTAG 2 cut(s) 590, 701
MaeII ACGT 2 cut(s) 48, 768
MaeIII GTNAC 2 cut(s) 423, 769
MalI GATC 4 cut(s) 5, 306, 572, 815
MboI GATC 4 cut(s) 3, 304, 570, 813
MboII GAAGA 6 cut(s) 32, 92, 116, 449, 452, 479
MflI RGATCY 2 cut(s) 304, 813
MhlI GDGCHC 1 cut(s) 606
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 4 cut(s) 25, 178, 338, 670
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 618
MmeI TCCRAC 2 cut(s) 238, 391
Mox20I TGGCCA 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 265
MscI TGGCCA 1 cut(s) 53
MseI TTAA 3 cut(s) 413, 444, 549
MslI CAYNNNNRTG 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 53
NdeII GATC 4 cut(s) 3, 304, 570, 813
NlaIII CATG 5 cut(s) 38, 97, 485, 616, 785
NmeAIII GCCGAG 1 cut(s) 625
NspI RCATGY 1 cut(s) 97
PagI TCATGA 2 cut(s) 612, 781
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 3 cut(s) 33, 72, 596
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Ppu21I YACGTR 1 cut(s) 769
PsiI TTATAA 1 cut(s) 147
PspEI GGTNACC 1 cut(s) 423
PstI CTGCAG 1 cut(s) 716
PsuI RGATCY 2 cut(s) 304, 813
RsaI GTAC 3 cut(s) 637, 746, 792
RsaNI GTAC 3 cut(s) 636, 745, 791
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 3 cut(s) 413, 444, 549
SatI GCNGC 3 cut(s) 32, 71, 595
Sau3AI GATC 4 cut(s) 3, 304, 570, 813
SchI GAGTC 1 cut(s) 618
SduI GDGCHC 1 cut(s) 606
SfcI CTRYAG 1 cut(s) 712
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
SnaBI TACGTA 1 cut(s) 769
Sse9I AATT 4 cut(s) 25, 178, 338, 670
SsiI CCGC 1 cut(s) 236
SspMI CTAG 2 cut(s) 590, 701
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 2 cut(s) 51, 771
TasI AATT 4 cut(s) 25, 178, 338, 670
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 3 cut(s) 413, 444, 549
Tru9I TTAA 3 cut(s) 413, 444, 549
TscAI CASTG 2 cut(s) 276, 648
TseI GCWGC 3 cut(s) 31, 70, 594
TspDTI ATGAA 5 cut(s) 93, 366, 470, 636, 643
TspRI CASTG 2 cut(s) 276, 648
XapI RAATTY 1 cut(s) 338
XceI RCATGY 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 265
XspI CTAG 2 cut(s) 590, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.