pycom05g18650

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000429
Physical Location & Seq
Forward (+)
21521379 .. 21523669
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g18650.3

Sequence Viewer

Length: 462 bp
ATGGTGATGAATTTTTTGACGGTGCTAACTTCATCCAATTTAATGAGGGTTGGCCAAAAAACACATCGGGAAACCTGCAACTCAGAAATGATGGGACATTATTCGGTGGAGGTGTGGAAGCTGGGGCTGTGTCTTCTGGATCTAATTTGTGAAGGGTTAGGACTCGAAACTGGATTTTTTGAGGGTGAACTGAGCCAAGTGCAGTTGATGGCTGCAAATTATTACCCACCATGTCCAGACCCAAGTTTAACCTTGGGATTACCTAAACACAGTAATATTAATCTCATAACTATTCTTCTCCAAGAACAAGTTCATGGCCTTCAAGTTTTGAAAGATGCTCAATGGCTGGCTGTTGAGCCTGTCCCCAATGCATTTGGGGTCAATATAGGTCACATGTTGCAGCAGGTTCGTTCATTATTAAAAACGGATGCTCTGTCGAAAATGTATTTGATAACCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

154

Amino Acids

17.05

Weight (kDa)

5.65

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 83, 394
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 10
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 2 cut(s) 323, 331
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AlwI GGATC 1 cut(s) 147
AoxI GGCC 2 cut(s) 52, 316
ApeKI GCWGC 2 cut(s) 212, 400
ApoI RAATTY 1 cut(s) 10
AseI ATTAAT 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 16, 197
BalI TGGCCA 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 199, 412
BccI CCATC 2 cut(s) 85, 202
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BfuAI ACCTGC 2 cut(s) 83, 394
BisI GCNGC 2 cut(s) 213, 401
BlsI GCNGC 2 cut(s) 214, 402
BmsI GCATC 2 cut(s) 325, 418
BpiI GAAGAC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 32, 433
BseMII CTCAG 2 cut(s) 96, 182
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 199, 412
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 221
BshFI GGCC 2 cut(s) 54, 318
BslFI GGGAC 2 cut(s) 108, 347
BsmFI GGGAC 2 cut(s) 108, 347
BsnI GGCC 2 cut(s) 54, 318
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 2 cut(s) 54, 318
BspCNI CTCAG 2 cut(s) 95, 183
BspMI ACCTGC 2 cut(s) 83, 394
BspPI GGATC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 22, 272
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 82, 191
BstF5I GGATG 2 cut(s) 32, 433
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 199, 412
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 2 cut(s) 54, 318
BtsCI GGATG 2 cut(s) 32, 433
BveI ACCTGC 2 cut(s) 83, 394
Cac8I GCNNGC 1 cut(s) 348
CviAII CATG 3 cut(s) 231, 314, 394
CviJI RGCY 9 cut(s) 54, 121, 127, 195, 212, 318, 346, 350, 358
CviKI_1 RGCY 9 cut(s) 54, 121, 127, 195, 212, 318, 346, 350, 358
DdeI CTNAG 2 cut(s) 82, 191
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 234, 317, 397
FaiI YATR 5 cut(s) 232, 287, 315, 386, 395
FaqI GGGAC 2 cut(s) 108, 347
FatI CATG 3 cut(s) 230, 313, 393
Fnu4HI GCNGC 2 cut(s) 213, 401
FokI GGATG 2 cut(s) 19, 440
Fsp4HI GCNGC 2 cut(s) 213, 401
GluI GCNGC 2 cut(s) 213, 401
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 54, 318
Hin1II CATG 3 cut(s) 234, 317, 397
HinfI GANTC 1 cut(s) 162
HphI GGTGA 2 cut(s) 16, 197
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 3 cut(s) 68, 137, 236
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 146, 329
HpyCH4III ACNGT 2 cut(s) 22, 272
HpyCH4V TGCA 5 cut(s) 78, 202, 215, 371, 400
HpyF3I CTNAG 2 cut(s) 82, 191
Hsp92II CATG 3 cut(s) 234, 317, 397
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 8 cut(s) 88, 107, 122, 156, 249, 332, 372, 389
Lsp1109I GCAGC 2 cut(s) 199, 412
LweI GCATC 2 cut(s) 325, 418
MaeIII GTNAC 1 cut(s) 389
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 125, 287
MflI RGATCY 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 4 cut(s) 10, 37, 144, 217
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 3 cut(s) 39, 103, 175
Mox20I TGGCCA 1 cut(s) 54
Mph1103I ATGCAT 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 309
MscI TGGCCA 1 cut(s) 54
MseI TTAA 4 cut(s) 41, 248, 279, 419
Msp20I TGGCCA 1 cut(s) 54
NdeII GATC 1 cut(s) 139
NlaIII CATG 3 cut(s) 234, 317, 397
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 397
PciI ACATGT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 309
PkrI GCNGC 2 cut(s) 214, 402
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PscI ACATGT 1 cut(s) 393
PshBI ATTAAT 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 139
SaqAI TTAA 4 cut(s) 41, 248, 279, 419
SatI GCNGC 2 cut(s) 213, 401
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 156
SetI ASST 8 cut(s) 77, 114, 123, 254, 265, 391, 408, 458
SfaNI GCATC 2 cut(s) 325, 418
Sse9I AATT 4 cut(s) 10, 37, 144, 217
SspI AATATT 1 cut(s) 277
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 22, 272
TaqI TCGA 2 cut(s) 165, 437
TasI AATT 4 cut(s) 10, 37, 144, 217
Tru1I TTAA 4 cut(s) 41, 248, 279, 419
Tru9I TTAA 4 cut(s) 41, 248, 279, 419
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 212, 400
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 21, 23, 302, 402
TspGWI ACGGA 1 cut(s) 440
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 309
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.