Rh6BG313800

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000429
Physical Location & Seq
Forward (+)
54367158 .. 54419047
51890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG313800.1

Sequence Viewer

Length: 822 bp
ATGTCTGTCATCAGCTTCATCCTTCCTTCTGGAAACTGCCACATTGAACCTGCAAAAGCACTTCTTGTTAAGGACTGCAGTACTCCACTCTACAGAGATTTTATATACAAAGACCTTCCTAGCACCTATAGAACAGATATTCTGGAGGCATTACCACCAGTTGAGCGAGATTTGGTTGGAAGTTACTCTGTGGAAGTGAGGAAGCTGGGTTTGTGTCTTTTGGATCTAATTTCTGAAGGATTAGGACTTGGATCTGGCTTTTTTGGGGGTGAACTTAGCCAAGTGCAAATAATGGCTACAAATCATTACCCACTATGCCTAGATCCAAGCTTAACCTTGGGATTACCTAAACATTGTGATGTCAACCTCATCACTCTTCTCATACAAGGAGAAGTTTCTAGACTTCAGGTTTTGAAAGATGGGCAATGTGCCAAGCACAGAGTTGTGACAAACAAAAAGGCTTCAAGGACGACAGTCGCCAGCTACATCAATCCATCCAACAACTGCCAAATTGAACCTGCAAAAGCACTACTAGTTAAGGACTTAAGTCCTCCACTCTACAGAGCTTTTGCATACAAGGATTTTCTTAGCTCCTATGTAACAGATACTCATCAAGAAGTACCGCCACTTGAGCGTTACACCTTAGTTCCACACAACTTGCTGCATAATATAATGAATGTTACTAAGGAGTTCTTTGAGCTACCTTGTGAAGACAAAGCAAACATCTATTCTGAAGATGCCAAGAAAAATCGTAGATTATACACTAGCATTGACTACATGAGAGAGAAGGTACATTTCTGGAGAGACACTTGGTTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

273

Amino Acids

30.94

Weight (kDa)

6.7

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 96 - 142 1.1e-09 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 58, 526
AciI CCGC 1 cut(s) 623
AclWI GGATC 3 cut(s) 231, 259, 317
AcuI CTGAAG 3 cut(s) 255, 389, 753
AfaI GTAC 3 cut(s) 82, 621, 792
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 4 cut(s) 47, 415, 465, 515
AhlI ACTAGT 1 cut(s) 532
AluBI AGCT 7 cut(s) 15, 205, 330, 483, 566, 591, 700
AluI AGCT 7 cut(s) 15, 205, 330, 483, 566, 591, 700
Alw26I GTCTC 1 cut(s) 798
AlwI GGATC 3 cut(s) 231, 259, 317
ApeKI GCWGC 1 cut(s) 661
AsuHPI GGTGA 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 717
BbvI GCAGC 1 cut(s) 648
BccI CCATC 2 cut(s) 413, 502
BcoDI GTCTC 1 cut(s) 798
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 6 cut(s) 120, 320, 399, 533, 765, 820
BfmI CTRYAG 4 cut(s) 76, 91, 127, 559
BfrI CTTAAG 1 cut(s) 544
BfuAI ACCTGC 2 cut(s) 58, 526
BisI GCNGC 1 cut(s) 662
BlsI GCNGC 1 cut(s) 663
BmcAI AGTACT 1 cut(s) 82
BmsI GCATC 1 cut(s) 727
BoxI GACNNNNGTC 2 cut(s) 473, 546
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 2 cut(s) 164, 820
BpuEI CTTGAG 1 cut(s) 650
BsaBI GATNNNNATC 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 431
Bse8I GATNNNNATC 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 18, 494
BseJI GATNNNNATC 1 cut(s) 609
BseMI GCAATG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 648
BseYI CCCAGC 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 798
Bsp143I GATC 3 cut(s) 223, 251, 322
BspACI CCGC 1 cut(s) 623
BspMAI CTGCAG 1 cut(s) 80
BspMI ACCTGC 2 cut(s) 58, 526
BspPI GGATC 3 cut(s) 231, 259, 317
BspTI CTTAAG 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 431
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 3 cut(s) 223, 251, 322
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 4 cut(s) 275, 587, 643, 684
BstF5I GGATG 2 cut(s) 18, 494
BstKTI GATC 3 cut(s) 226, 254, 325
BstMAI GTCTC 1 cut(s) 798
BstMBI GATC 3 cut(s) 223, 251, 322
BstMWI GCNNNNNNNGC 1 cut(s) 631
BstPAI GACNNNNGTC 2 cut(s) 473, 546
BstSFI CTRYAG 4 cut(s) 76, 91, 127, 559
BstV1I GCAGC 1 cut(s) 648
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 3 cut(s) 223, 251, 322
BstYI RGATCY 3 cut(s) 223, 251, 322
BtsCI GGATG 2 cut(s) 18, 494
BveI ACCTGC 2 cut(s) 58, 526
Cac8I GCNNGC 1 cut(s) 481
Csp6I GTAC 3 cut(s) 81, 620, 791
CspCI CAANNNNNGTGG 2 cut(s) 639, 674
CviAII CATG 1 cut(s) 778
CviQI GTAC 3 cut(s) 81, 620, 791
DdeI CTNAG 4 cut(s) 275, 587, 643, 684
DpnI GATC 3 cut(s) 225, 253, 324
DpnII GATC 3 cut(s) 223, 251, 322
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 336
Eco57I CTGAAG 3 cut(s) 255, 389, 753
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 781
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 677, 709
FatI CATG 1 cut(s) 777
Fnu4HI GCNGC 1 cut(s) 662
FokI GGATG 2 cut(s) 5, 481
Fsp4HI GCNGC 1 cut(s) 662
FspBI CTAG 6 cut(s) 120, 320, 399, 533, 765, 820
GluI GCNGC 1 cut(s) 662
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 2 cut(s) 164, 820
Hin1II CATG 1 cut(s) 781
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 328
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 272, 364
Hpy188I TCNGA 2 cut(s) 235, 733
Hpy188III TCNNGA 5 cut(s) 30, 143, 399, 614, 799
Hpy8I GTNNAC 2 cut(s) 272, 364
HpyAV CCTTC 5 cut(s) 32, 36, 125, 230, 781
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 6 cut(s) 53, 78, 286, 521, 572, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 631
HpyF3I CTNAG 4 cut(s) 275, 587, 643, 684
Hsp92II CATG 1 cut(s) 781
Kzo9I GATC 3 cut(s) 223, 251, 322
LmnI GCTCC 1 cut(s) 596
Lsp1109I GCAGC 1 cut(s) 648
LweI GCATC 1 cut(s) 727
MaeI CTAG 6 cut(s) 120, 320, 399, 533, 765, 820
MaeIII GTNAC 5 cut(s) 182, 445, 598, 635, 679
MalI GATC 3 cut(s) 225, 253, 324
MboI GATC 3 cut(s) 223, 251, 322
MboII GAAGA 3 cut(s) 368, 722, 746
MflI RGATCY 3 cut(s) 223, 251, 322
MluCI AATT 2 cut(s) 228, 510
MmeI TCCRAC 2 cut(s) 157, 522
MnlI CCTC 4 cut(s) 139, 192, 377, 561
MseI TTAA 5 cut(s) 69, 332, 537, 545, 815
MslI CAYNNNNRTG 1 cut(s) 357
MspCI CTTAAG 1 cut(s) 544
MwoI GCNNNNNNNGC 1 cut(s) 631
NdeII GATC 3 cut(s) 223, 251, 322
NlaIII CATG 1 cut(s) 781
NmuCI GTSAC 1 cut(s) 445
PkrI GCNGC 1 cut(s) 663
PshAI GACNNNNGTC 2 cut(s) 473, 546
PspFI CCCAGC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 3 cut(s) 223, 251, 322
RsaI GTAC 3 cut(s) 82, 621, 792
RsaNI GTAC 3 cut(s) 81, 620, 791
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 5 cut(s) 69, 332, 537, 545, 815
SatI GCNGC 1 cut(s) 662
Sau3AI GATC 3 cut(s) 223, 251, 322
ScaI AGTACT 1 cut(s) 82
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 4 cut(s) 76, 91, 127, 559
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 544, 629
SmoI CTYRAG 2 cut(s) 544, 629
SpeI ACTAGT 1 cut(s) 532
Sse9I AATT 2 cut(s) 228, 510
SsiI CCGC 1 cut(s) 623
SspMI CTAG 6 cut(s) 120, 320, 399, 533, 765, 820
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 475
TasI AATT 2 cut(s) 228, 510
TatI WGTACW 1 cut(s) 80
Tru1I TTAA 5 cut(s) 69, 332, 537, 545, 815
Tru9I TTAA 5 cut(s) 69, 332, 537, 545, 815
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 661
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 7, 689
Vha464I CTTAAG 1 cut(s) 544
XbaI TCTAGA 1 cut(s) 398
XspI CTAG 6 cut(s) 120, 320, 399, 533, 765, 820
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.