RchiOBHm_Chr6g0288511

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000429
Physical Location & Seq
Forward (+)
51746875 .. 51747051
177 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25887

Sequence Viewer

Length: 177 bp
ATGTTAACCTCATCACTCTTCTTCTCGATCCAAGGTGAAGAAGTTCATGGTCTTCAGGTCTTGAAAGATGGGCAGTGGTTGGCTGTCGAGCCTGTCCCTAATGCCTTTGTGGTCAATATAGGCCACATGTTACAGGTGCATCTATCTACATATCTACGATCGATCTTCTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

58

Amino Acids

6.56

Weight (kDa)

5.75

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 5 - 55 4.9e-10 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 1 cut(s) 64
AlwI GGATC 1 cut(s) 22
AoxI GGCC 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 44
BccI CCATC 1 cut(s) 62
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 31
BseCI ATCGAT 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 27, 158, 162
BspANI GGCC 1 cut(s) 123
BspDI ATCGAT 1 cut(s) 161
BspPI GGATC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 3 cut(s) 27, 158, 162
BssT1I CCWWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 23
BstKTI GATC 3 cut(s) 30, 161, 165
BstMBI GATC 3 cut(s) 27, 158, 162
BstMCI CGRYCG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 161
BsuRI GGCC 1 cut(s) 123
BsuTUI ATCGAT 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
ClaI ATCGAT 1 cut(s) 161
CviAII CATG 2 cut(s) 47, 127
CviJI RGCY 3 cut(s) 83, 91, 123
CviKI_1 RGCY 3 cut(s) 83, 91, 123
DpnI GATC 3 cut(s) 29, 160, 164
DpnII GATC 3 cut(s) 27, 158, 162
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 50, 130
FaiI YATR 4 cut(s) 48, 119, 128, 151
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 46, 126
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 2 cut(s) 50, 130
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaI GTTAAC 1 cut(s) 6
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 2 cut(s) 25, 61
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 139
Hsp92II CATG 2 cut(s) 50, 130
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 27, 158, 162
LpnPI CCDG 3 cut(s) 41, 105, 119
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 129
MalI GATC 3 cut(s) 29, 160, 164
MboI GATC 3 cut(s) 27, 158, 162
MboII GAAGA 6 cut(s) 10, 13, 44, 50, 157, 160
MnlI CCTC 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 1 cut(s) 5
NdeII GATC 3 cut(s) 27, 158, 162
NlaIII CATG 2 cut(s) 50, 130
NspI RCATGY 1 cut(s) 130
PciI ACATGT 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 42
Ple19I CGATCG 1 cut(s) 161
PscI ACATGT 1 cut(s) 126
PvuI CGATCG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 5
Sau3AI GATC 3 cut(s) 27, 158, 162
SetI ASST 4 cut(s) 11, 37, 60, 138
SfaNI GCATC 1 cut(s) 148
SgeI CNNG 9 cut(s) 37, 44, 59, 68, 73, 100, 104, 139, 146
StyI CCWWGG 1 cut(s) 31
TaqI TCGA 3 cut(s) 26, 87, 161
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 1 cut(s) 80
XceI RCATGY 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.