Rh6DG306700

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000429
Physical Location & Seq
Forward (+)
50714256 .. 50716890
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG306700.1

Sequence Viewer

Length: 321 bp
ATGGTCTTCAAAGATGAGCAGTGGTTGGTTGTTGAGCCTGTCCCTGATGCCTTTGTGGTTAATATAGGCCACACATTACAGATTATCATTATTAGTAATGGGAAGCTAAGCAGTGCGGAGGACAGAGTTGCGGCAAACAAAAAGGTTTCAAGGATGTCTGTCACCAGCGTCATCCTTCCTTCTGGAAACTGCCACATTGAACCTGCAAAAGCACTTCTTGTTGAGGACTGCAGTAATAGAGATTCTATATATACAAAGACTTTCCTAGCACCTATAGAACAGATATTCTGGAGGGATGAGTGGTATAAGCTCCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

106

Amino Acids

12.0

Weight (kDa)

5.6

Isoelectric Point (pI)

63.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 2 - 58 5e-10 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AciI CCGC 2 cut(s) 116, 131
AgsI TTSAA 3 cut(s) 10, 150, 200
AluBI AGCT 2 cut(s) 106, 310
AluI AGCT 2 cut(s) 106, 310
AoxI GGCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 154
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 2 cut(s) 229, 273
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 1 cut(s) 132
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 133
BmsI GCATC 1 cut(s) 37
BpmI CTGGAG 2 cut(s) 296, 310
Bpu1102I GCTNAGC 1 cut(s) 107
BseGI GGATG 3 cut(s) 159, 171, 301
BshFI GGCC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 107
BspACI CCGC 2 cut(s) 116, 131
BspANI GGCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 233
BspMI ACCTGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 3 cut(s) 159, 171, 301
BstSFI CTRYAG 2 cut(s) 229, 273
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 3 cut(s) 159, 171, 301
BtsI GCAGTG 2 cut(s) 26, 118
BtsIMutI CAGTG 2 cut(s) 26, 118
BveI ACCTGC 1 cut(s) 211
CseI GACGC 1 cut(s) 157
CviJI RGCY 5 cut(s) 37, 69, 106, 310, 316
CviKI_1 RGCY 5 cut(s) 37, 69, 106, 310, 316
DdeI CTNAG 1 cut(s) 107
FaiI YATR 6 cut(s) 65, 248, 250, 252, 275, 306
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 3 cut(s) 158, 166, 308
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 2 cut(s) 296, 310
HaeIII GGCC 1 cut(s) 69
HgaI GACGC 1 cut(s) 157
HinfI GANTC 1 cut(s) 242
HphI GGTGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 183, 289
HpyAV CCTTC 2 cut(s) 185, 189
HpyCH4V TGCA 2 cut(s) 206, 231
HpyF3I CTNAG 1 cut(s) 107
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 6 cut(s) 51, 57, 168, 178, 216, 274
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 112, 217, 285
MseI TTAA 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 132
SetI ASST 5 cut(s) 108, 147, 205, 274, 312
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 2 cut(s) 229, 273
SgeI CNNG 9 cut(s) 50, 56, 162, 177, 195, 215, 230, 278, 301
SsiI CCGC 2 cut(s) 116, 131
SspMI CTAG 1 cut(s) 266
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 2 cut(s) 26, 118
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspRI CASTG 2 cut(s) 26, 118
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.