RchiOBHm_Chr6g0288491

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000429
Physical Location & Seq
Forward (+)
51731866 .. 51734482
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25885

Sequence Viewer

Length: 360 bp
ATGAAGAAAATAGTGCAAACCACGAAGATTGAAAGCTACTGTTGCGCTTTCCTTTTGGTGGATATGATGAAAGTAAAGGCTGGTGGAGGAGACGTTGGAGAGGACGTGGTCGGCATTATCAGCAATGGGAAGCTATGCAGTGCCGAGCACAGAGTTGTGGCAAACAAAAAGGCTTCAAGGATGACAGTCGCCAGCTACATCAATCCATCCAACAATTGCCAAATTGAACCTGCAAAAGCACTACTAGTTAAGGTCTTCAGTCCTCCACTCTACAGAGCTTTTGTATACAAGGATTTTCTTAGCACATATGTAACAGATACTCATCAAGAAGTACCGCCACTTGAGCGTTACACCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

119

Amino Acids

13.18

Weight (kDa)

8.9

Isoelectric Point (pI)

22.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 285
AciI CCGC 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 241
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 3 cut(s) 32, 177, 227
AhlI ACTAGT 1 cut(s) 244
AjiI CACGTC 1 cut(s) 106
AluBI AGCT 4 cut(s) 36, 133, 195, 278
AluI AGCT 4 cut(s) 36, 133, 195, 278
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 321
BsaXI ACNNNNNCTCC 4 cut(s) 78, 90, 108, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 321
BseGI GGATG 2 cut(s) 186, 206
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 150
BspACI CCGC 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 130
BssNAI GTATAC 1 cut(s) 286
Bst1107I GTATAC 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 41, 187, 355
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 186, 206
BstHHI GCGC 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 42, 120, 343
BstSFI CTRYAG 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 247
BstZ17I GTATAC 1 cut(s) 286
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 2 cut(s) 186, 206
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 332
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviJI RGCY 6 cut(s) 36, 80, 133, 173, 195, 278
CviKI_1 RGCY 6 cut(s) 36, 80, 133, 173, 195, 278
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 84
FaiI YATR 5 cut(s) 65, 136, 286, 307, 309
FauNDI CATATG 1 cut(s) 307
FblI GTMKAC 1 cut(s) 285
FokI GGATG 2 cut(s) 193, 193
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 47
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 286
HpyCH4III ACNGT 3 cut(s) 41, 187, 355
HpyCH4IV ACGT 2 cut(s) 93, 105
HpyCH4V TGCA 3 cut(s) 16, 138, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 120, 343
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 2 cut(s) 93, 105
HspAI GCGC 1 cut(s) 45
LpnPI CCDG 3 cut(s) 66, 205, 243
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 93, 105
MaeIII GTNAC 2 cut(s) 310, 347
MboII GAAGA 3 cut(s) 16, 37, 247
MfeI CAATTG 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 214, 222
MmeI TCCRAC 2 cut(s) 76, 234
MnlI CCTC 3 cut(s) 80, 94, 273
MseI TTAA 1 cut(s) 249
MunI CAATTG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 42, 120, 343
NdeI CATATG 1 cut(s) 307
NmeAIII GCCGAG 1 cut(s) 169
PflFI GACNNNGTC 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SaqAI TTAA 1 cut(s) 249
SduI GDGCHC 1 cut(s) 150
SetI ASST 8 cut(s) 38, 96, 108, 135, 197, 232, 255, 280
SfcI CTRYAG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 2 cut(s) 214, 222
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 245
TaaI ACNGT 3 cut(s) 41, 187, 355
TaiI ACGT 2 cut(s) 96, 108
TasI AATT 2 cut(s) 214, 222
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 17, 83
TspRI CASTG 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.