Rroxscaffold_5G00334150

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000429
Physical Location & Seq
Forward (+)
1479343 .. 1482493
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334150.1

Sequence Viewer

Length: 906 bp
ATGTTTGCTTCAATTGAATCCCAACTGTTGTTTCACAACCCTGTGAAATGCTTTGTGGTAGTGTGCATTCGGATCAGAAGGGGCAGATCTATTGTGATCATTACTGCATTAGACTTTGATACCTCATATACAATTAGAGAATCTCAAGGTGCATTAGCGGAAGCAAATTTCACTCAGATTCGGGCAAAACAGGTACATGCTGATCTGACTGAATTTGAGACGATTGCAAAGGTAATCAACCATGGCATATCAGAAAATTTGTTGCATGACACCATGGATGTATTCAGGGAGTTTTTTGCGCTGCCTCCAGAGGACAAGGCAAGCTTCTTCTCTGAGGACCCTAACAAACTCTGCAGGCTCATAACTTGCACCGGAAATTATGATAGGGAGAATGTTCATCTTTGGCTGGATGCCCTCCGACACACTTGTCATCCTTTAGATAAATTCATTCCACTTTGGCCTCAGCAACTGCTTAAATATCGAGATGAACTTAACCAAGAGACTGTACTCTCAGTTGATTATTATCCACCTTGCCCAGATCCATGTTTGACATTAGGAATAACTAAACACTGTGACCCAAACCTCATCACAATTTTACTTCAAGGAGATGTACATGGCCTTCAGGGTTTTAAGGATGGGGAATGGATTGGTGTGGAACCTCTTCTGCAAGGACTAGTGGTTAACATAAGCCATCAGTTACAGATCATAAGTAAAGGGAAGCTGAAGTGTGCTGAACATCGAGCACTGACGAATCCAAGTAATGCTCGGACATCTGCTGCAATTTTCATTGCACCTACCCAAGATTGCCATATACAACCTGCAACAGGTCTTATCAATGCAAGAAATCCCCAAGTCTACAAAGGCTTCCTGTTTGAGCCCAAAAGTAAGTTTGGCAAAATCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

301

Amino Acids

34.03

Weight (kDa)

6.45

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 77 - 155 6.2e-10 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 169 - 265 3.7e-25 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 826
AccI GTMKAC 1 cut(s) 855
AciI CCGC 1 cut(s) 158
AclWI GGATC 2 cut(s) 80, 533
AcsI RAATTY 4 cut(s) 166, 212, 256, 443
AcuI CTGAAG 2 cut(s) 605, 743
AfaI GTAC 3 cut(s) 195, 507, 612
AfiI CCNNNNNNNGG 1 cut(s) 824
AgsI TTSAA 3 cut(s) 12, 17, 602
AhlI ACTAGT 1 cut(s) 673
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 2 cut(s) 324, 721
AluI AGCT 2 cut(s) 324, 721
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 2 cut(s) 212, 494
AlwI GGATC 2 cut(s) 80, 533
AlwNI CAGNNNCTG 1 cut(s) 469
AoxI GGCC 2 cut(s) 458, 616
ApeKI GCWGC 2 cut(s) 301, 776
ApoI RAATTY 4 cut(s) 166, 212, 256, 443
Asp700I GAANNNNTTC 1 cut(s) 660
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 337
AvaII GGWCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 879
BarI GAAGNNNNNNTAC 2 cut(s) 603, 635
Bbv12I GWGCWC 1 cut(s) 745
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 288, 763
BccI CCATC 2 cut(s) 629, 699
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 212, 494
BcuI ACTAGT 1 cut(s) 673
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 352
BfuAI ACCTGC 1 cut(s) 826
BglII AGATCT 1 cut(s) 86
BisI GCNGC 2 cut(s) 302, 777
BlsI GCNGC 2 cut(s) 303, 778
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 2 cut(s) 339, 657
BmsI GCATC 1 cut(s) 400
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 241, 273
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 824
Bse3DI GCAATG 1 cut(s) 786
Bse8I GATNNNNATC 1 cut(s) 522
BseDI CCNNGG 2 cut(s) 241, 273
BseGI GGATG 4 cut(s) 283, 415, 430, 640
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 1 cut(s) 824
BseMI GCAATG 1 cut(s) 786
BseMII CTCAG 4 cut(s) 188, 324, 476, 525
BseXI GCAGC 2 cut(s) 288, 763
BshFI GGCC 2 cut(s) 460, 618
BsiHKAI GWGCWC 1 cut(s) 745
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 824
BsmAI GTCTC 2 cut(s) 212, 494
BsmBI CGTCTC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 2 cut(s) 460, 618
Bsp1286I GDGCHC 2 cut(s) 745, 879
Bsp1407I TGTACA 1 cut(s) 610
Bsp143I GATC 6 cut(s) 72, 86, 96, 202, 538, 702
Bsp19I CCATGG 2 cut(s) 241, 273
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 460, 618
BspCNI CTCAG 4 cut(s) 187, 325, 475, 524
BspLI GGNNCC 2 cut(s) 339, 657
BspMAI CTGCAG 1 cut(s) 356
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 2 cut(s) 80, 533
BsrDI GCAATG 1 cut(s) 786
BsrGI TGTACA 1 cut(s) 610
BssECI CCNNGG 2 cut(s) 241, 273
BssMI GATC 6 cut(s) 72, 86, 96, 202, 538, 702
BssT1I CCWWGG 2 cut(s) 241, 273
Bst4CI ACNGT 3 cut(s) 27, 505, 572
Bst6I CTCTTC 1 cut(s) 666
BstAUI TGTACA 1 cut(s) 610
BstC8I GCNNGC 2 cut(s) 322, 356
BstDEI CTNAG 4 cut(s) 174, 333, 462, 511
BstDSI CCRYGG 2 cut(s) 241, 273
BstENI CCTNNNNNAGG 1 cut(s) 822
BstF5I GGATG 4 cut(s) 283, 415, 430, 640
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 6 cut(s) 75, 89, 99, 205, 541, 705
BstMAI GTCTC 2 cut(s) 212, 494
BstMBI GATC 6 cut(s) 72, 86, 96, 202, 538, 702
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 288, 763
BstX2I RGATCY 2 cut(s) 86, 538
BstYI RGATCY 2 cut(s) 86, 538
BsuRI GGCC 2 cut(s) 460, 618
BtgI CCRYGG 2 cut(s) 241, 273
BtsCI GGATG 4 cut(s) 283, 415, 430, 640
BtsIMutI CAGTG 2 cut(s) 568, 743
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 2 cut(s) 322, 356
CaiI CAGNNNCTG 1 cut(s) 469
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 337
Csp6I GTAC 3 cut(s) 194, 506, 611
CviAII CATG 6 cut(s) 197, 242, 266, 274, 543, 614
CviJI RGCY 9 cut(s) 324, 358, 406, 460, 618, 690, 721, 864, 877
CviKI_1 RGCY 9 cut(s) 324, 358, 406, 460, 618, 690, 721, 864, 877
CviQI GTAC 3 cut(s) 194, 506, 611
DdeI CTNAG 4 cut(s) 174, 333, 462, 511
DpnI GATC 6 cut(s) 74, 88, 98, 204, 540, 704
DpnII GATC 6 cut(s) 72, 86, 96, 202, 538, 702
DrdI GACNNNNNNGTC 1 cut(s) 426
DseDI GACNNNNNNGTC 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco130I CCWWGG 2 cut(s) 241, 273
Eco24I GRGCYC 1 cut(s) 879
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 2 cut(s) 605, 743
EcoNI CCTNNNNNAGG 1 cut(s) 822
EcoO109I RGGNCCY 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 241, 273
EcoT38I GRGCYC 1 cut(s) 879
ErhI CCWWGG 2 cut(s) 241, 273
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 6 cut(s) 200, 245, 269, 277, 546, 617
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FatI CATG 6 cut(s) 196, 241, 265, 273, 542, 613
FbaI TGATCA 1 cut(s) 96
FblI GTMKAC 1 cut(s) 855
Fnu4HI GCNGC 2 cut(s) 302, 777
FokI GGATG 4 cut(s) 290, 417, 422, 647
FriOI GRGCYC 1 cut(s) 879
Fsp4HI GCNGC 2 cut(s) 302, 777
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 300
GluI GCNGC 2 cut(s) 302, 777
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 460, 618
HapII CCGG 1 cut(s) 372
HhaI GCGC 1 cut(s) 301
Hin1II CATG 6 cut(s) 200, 245, 269, 277, 546, 617
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 4 cut(s) 17, 140, 178, 751
HpaI GTTAAC 1 cut(s) 682
HpaII CCGG 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 682, 856
Hpy188I TCNGA 8 cut(s) 72, 77, 177, 207, 253, 334, 419, 768
Hpy188III TCNNGA 2 cut(s) 308, 482
Hpy8I GTNNAC 2 cut(s) 682, 856
HpyAV CCTTC 2 cut(s) 72, 629
HpyCH4III ACNGT 3 cut(s) 27, 505, 572
HpyF3I CTNAG 4 cut(s) 174, 333, 462, 511
Hsp92II CATG 6 cut(s) 200, 245, 269, 277, 546, 617
HspAI GCGC 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 682
Kzo9I GATC 6 cut(s) 72, 86, 96, 202, 538, 702
Lsp1109I GCAGC 2 cut(s) 288, 763
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 674
MaeIII GTNAC 2 cut(s) 572, 696
MalI GATC 6 cut(s) 74, 88, 98, 204, 540, 704
MboI GATC 6 cut(s) 72, 86, 96, 202, 538, 702
MboII GAAGA 2 cut(s) 319, 653
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 2 cut(s) 86, 538
MhlI GDGCHC 2 cut(s) 745, 879
MluCI AATT 9 cut(s) 12, 132, 166, 212, 256, 376, 443, 591, 780
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 8 cut(s) 133, 304, 315, 328, 425, 471, 593, 669
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 4 cut(s) 474, 492, 630, 681
MspI CCGG 1 cut(s) 372
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 66
NcoI CCATGG 2 cut(s) 241, 273
NdeII GATC 6 cut(s) 72, 86, 96, 202, 538, 702
NlaIII CATG 6 cut(s) 200, 245, 269, 277, 546, 617
NlaIV GGNNCC 2 cut(s) 339, 657
NmuCI GTSAC 1 cut(s) 572
NspI RCATGY 1 cut(s) 200
PctI GAATGC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 4 cut(s) 17, 140, 178, 751
PkrI GCNGC 2 cut(s) 303, 778
PpuMI RGGWCCY 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 339, 657
PspPI GGNCC 1 cut(s) 337
PspPPI RGGWCCY 1 cut(s) 337
PstI CTGCAG 1 cut(s) 356
PstNI CAGNNNCTG 1 cut(s) 469
PsuI RGATCY 2 cut(s) 86, 538
RsaI GTAC 3 cut(s) 195, 507, 612
RsaNI GTAC 3 cut(s) 194, 506, 611
SaqAI TTAA 4 cut(s) 474, 492, 630, 681
SatI GCNGC 2 cut(s) 302, 777
Sau3AI GATC 6 cut(s) 72, 86, 96, 202, 538, 702
Sau96I GGNCC 1 cut(s) 337
SduI GDGCHC 2 cut(s) 745, 879
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
SpeI ACTAGT 1 cut(s) 673
Sse9I AATT 9 cut(s) 12, 132, 166, 212, 256, 376, 443, 591, 780
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 674
StyI CCWWGG 2 cut(s) 241, 273
TaaI ACNGT 3 cut(s) 27, 505, 572
TaqI TCGA 2 cut(s) 481, 739
TasI AATT 9 cut(s) 12, 132, 166, 212, 256, 376, 443, 591, 780
TatI WGTACW 2 cut(s) 505, 610
TfiI GAWTC 4 cut(s) 17, 140, 178, 751
Tru1I TTAA 4 cut(s) 474, 492, 630, 681
Tru9I TTAA 4 cut(s) 474, 492, 630, 681
TscAI CASTG 2 cut(s) 575, 750
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 2 cut(s) 301, 776
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 4 cut(s) 386, 436, 501, 775
TspRI CASTG 2 cut(s) 575, 750
VpaK11BI GGWCC 1 cut(s) 337
XagI CCTNNNNNAGG 1 cut(s) 822
XapI RAATTY 4 cut(s) 166, 212, 256, 443
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 855
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.