Rh7AG095200

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000429
Physical Location & Seq
Forward (+)
7263631 .. 7265001
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG095200.1

Sequence Viewer

Length: 876 bp
ATGGAGAAGCTTGTTCCAAACTGGTACAGTGCTGCTCAACCCTTGCCTGAGACTTGCATATTCCCACCTGATGCAAGACCAGGGAAGTTTAGCATTGCTCCTTCAAGCGAAGAATTCGGATTCTTTCGGGTAATCAACCATTGCATACCAGAAGCTTTGATGAATGACACAATGGATGTGCTGAAGGAGTTCTTTGACAGTGTTAATTATGATTGGGAGGAAATTCATCTTTGGCGCGATTTTATCCGACACCCTTTAACTAGATATACAATCTGTAATTACAGCAATCTTTATCTATGTTATTTCAGAGAGCATGTTAGCAAATGTTTCATCGACGTGAAGGAAGTGGCTTTGAATATTTTGAAGCTGACCGGTAAAGGACTAGGGATAGGATCAGAGTATTTCAGTGATGAACTTAGCAGAGAGACCGACGTCTTTGTTAATAACTATCCACCTTGTCCAGGCCCAAGTTTGACACTAGGAATAACTAAACACTCTGACCCACAGCTCATCACAATTTTACATCAAGGGGATGTCAGTGGCCTTCAAGTTTTCAAGGATGGGGAATGGATTGGACTGGAACCTACTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTAGTAATGGAAAGCTCAAGTGTGATGAACATCAAGTAGTGACAAATTCAAGTACTGTTTGGACGACGTTTGGATTTTTCATCACACCCTCCCCTGATTGCTGTATAGAACCTGCAGCAGCTCTCATTAATGCAAGCAATCCCCGACTCTATAAAGGCTTCCGATATGAAGAGTTTCCTGCCAACTACTTTAGGAAGCAGGGGAAAACCGAAGTTGTGCTTGAACCCTTTGAAATCGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

291

Amino Acids

33.16

Weight (kDa)

5.06

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 35 - 66 2.2e-06 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 144 - 234 1.1e-24 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 751
AccII CGCG 1 cut(s) 237
AclWI GGATC 2 cut(s) 400, 635
AcsI RAATTY 3 cut(s) 113, 222, 676
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 2 cut(s) 26, 685
AfiI CCNNNNNNNGG 1 cut(s) 461
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 9 cut(s) 105, 355, 364, 548, 556, 591, 681, 854, 863
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 2 cut(s) 79, 460
AluBI AGCT 6 cut(s) 10, 155, 367, 508, 646, 752
AluI AGCT 6 cut(s) 10, 155, 367, 508, 646, 752
Alw26I GTCTC 2 cut(s) 44, 419
AlwI GGATC 2 cut(s) 400, 635
AoxI GGCC 2 cut(s) 463, 541
ApeKI GCWGC 3 cut(s) 32, 746, 749
ApoI RAATTY 3 cut(s) 113, 222, 676
AseI ATTAAT 1 cut(s) 759
AsiGI ACCGGT 1 cut(s) 371
Asp700I GAANNNNTTC 2 cut(s) 188, 804
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 464
BbvI GCAGC 3 cut(s) 19, 758, 761
BccI CCATC 1 cut(s) 554
BciT130I CCWGG 2 cut(s) 81, 462
BcoDI GTCTC 2 cut(s) 44, 419
BfaI CTAG 3 cut(s) 261, 383, 479
BfmI CTRYAG 1 cut(s) 744
BfuAI ACCTGC 1 cut(s) 751
BisI GCNGC 3 cut(s) 33, 747, 750
BlsI GCNGC 3 cut(s) 34, 748, 751
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 2 cut(s) 81, 462
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 2 cut(s) 81, 462
BmsI GCATC 1 cut(s) 61
BoxI GACNNNNGTC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 632
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 3 cut(s) 26, 582, 603
Bse3DI GCAATG 2 cut(s) 93, 139
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 2 cut(s) 81, 462
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 3 cut(s) 181, 538, 565
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 2 cut(s) 93, 139
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 3 cut(s) 26, 582, 603
BseXI GCAGC 3 cut(s) 19, 758, 761
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 465, 543
BshTI ACCGGT 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 44, 419
BsnI GGCC 2 cut(s) 465, 543
Bso31I GGTCTC 1 cut(s) 419
Bsp143I GATC 2 cut(s) 392, 627
BspANI GGCC 2 cut(s) 465, 543
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 582
BspMAI CTGCAG 1 cut(s) 748
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 2 cut(s) 400, 635
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 2 cut(s) 93, 139
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 3 cut(s) 26, 582, 603
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 2 cut(s) 392, 627
BssNI GRCGYC 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 81, 462
Bst4CI ACNGT 3 cut(s) 29, 200, 688
Bst6I CTCTTC 1 cut(s) 795
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 766
BstDEI CTNAG 2 cut(s) 48, 416
BstENI CCTNNNNNAGG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 181, 538, 565
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 395, 630
BstMAI GTCTC 2 cut(s) 44, 419
BstMBI GATC 2 cut(s) 392, 627
BstNI CCWGG 2 cut(s) 81, 462
BstNSI RCATGY 1 cut(s) 317
BstPAI GACNNNNGTC 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 79, 460
BstSFI CTRYAG 1 cut(s) 744
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 19, 758, 761
BsuRI GGCC 2 cut(s) 465, 543
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 3 cut(s) 181, 538, 565
BtsIMutI CAGTG 4 cut(s) 34, 205, 412, 544
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 1 cut(s) 766
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 25, 684
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 1 cut(s) 314
CviQI GTAC 2 cut(s) 25, 684
DdeI CTNAG 2 cut(s) 48, 416
DpnI GATC 2 cut(s) 394, 629
DpnII GATC 2 cut(s) 392, 627
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Eco31I GGTCTC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 79, 460
FaeI CATG 1 cut(s) 317
FalI AAGNNNNNCTT 4 cut(s) 176, 208, 834, 866
FatI CATG 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 33, 747, 750
FokI GGATG 3 cut(s) 188, 545, 572
Fsp4HI GCNGC 3 cut(s) 33, 747, 750
FspBI CTAG 3 cut(s) 261, 383, 479
GlaI GCGC 1 cut(s) 236
GluI GCNGC 3 cut(s) 33, 747, 750
HaeIII GGCC 2 cut(s) 465, 543
HapII CCGG 1 cut(s) 372
HhaI GCGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 1 cut(s) 317
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 2 cut(s) 8, 153
HinfI GANTC 2 cut(s) 120, 777
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 1 cut(s) 372
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 6 cut(s) 119, 248, 308, 397, 499, 794
Hpy8I GTNNAC 1 cut(s) 607
Hpy99I CGWCG 3 cut(s) 338, 434, 700
HpyAV CCTTC 4 cut(s) 111, 178, 334, 554
HpyCH4III ACNGT 3 cut(s) 29, 200, 688
HpyCH4IV ACGT 3 cut(s) 336, 432, 698
HpyCH4V TGCA 5 cut(s) 57, 74, 144, 746, 764
HpyF3I CTNAG 2 cut(s) 48, 416
HpySE526I ACGT 3 cut(s) 336, 432, 698
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 1 cut(s) 317
HspAI GCGC 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 2 cut(s) 392, 627
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 19, 758, 761
LweI GCATC 1 cut(s) 61
MaeI CTAG 3 cut(s) 261, 383, 479
MaeII ACGT 3 cut(s) 336, 432, 698
MaeIII GTNAC 1 cut(s) 670
MalI GATC 2 cut(s) 394, 629
MboI GATC 2 cut(s) 392, 627
MboII GAAGA 2 cut(s) 122, 812
MluCI AATT 7 cut(s) 113, 205, 222, 277, 516, 620, 676
MlyI GAGTC 1 cut(s) 771
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 2 cut(s) 211, 730
MroXI GAANNNNTTC 2 cut(s) 188, 804
MseI TTAA 5 cut(s) 204, 257, 441, 606, 759
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 81, 462
MvaI CCWGG 2 cut(s) 81, 462
MvnI CGCG 1 cut(s) 237
NdeII GATC 2 cut(s) 392, 627
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 1 cut(s) 317
PdmI GAANNNNTTC 2 cut(s) 188, 804
PfeI GAWTC 1 cut(s) 120
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 3 cut(s) 34, 748, 751
PleI GAGTC 1 cut(s) 771
PpsI GAGTC 1 cut(s) 771
PshAI GACNNNNGTC 1 cut(s) 431
PshBI ATTAAT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 79, 460
PspGI CCWGG 2 cut(s) 79, 460
PspN4I GGNNCC 1 cut(s) 582
PspPI GGNCC 1 cut(s) 464
PstI CTGCAG 1 cut(s) 748
RsaI GTAC 2 cut(s) 26, 685
RsaNI GTAC 2 cut(s) 25, 684
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 5 cut(s) 204, 257, 441, 606, 759
SatI GCNGC 3 cut(s) 33, 747, 750
Sau3AI GATC 2 cut(s) 392, 627
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 1 cut(s) 685
SchI GAGTC 1 cut(s) 771
ScrFI CCNGG 2 cut(s) 81, 462
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 744
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 7 cut(s) 113, 205, 222, 277, 516, 620, 676
SspI AATATT 1 cut(s) 358
SspMI CTAG 3 cut(s) 261, 383, 479
StyD4I CCNGG 2 cut(s) 79, 460
TaaI ACNGT 3 cut(s) 29, 200, 688
TaiI ACGT 3 cut(s) 339, 435, 701
TaqI TCGA 2 cut(s) 333, 867
TaqII GACCGA 1 cut(s) 443
TasI AATT 7 cut(s) 113, 205, 222, 277, 516, 620, 676
TatI WGTACW 1 cut(s) 683
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 5 cut(s) 204, 257, 441, 606, 759
Tru9I TTAA 5 cut(s) 204, 257, 441, 606, 759
TscAI CASTG 4 cut(s) 34, 205, 412, 544
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 3 cut(s) 32, 746, 749
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 7 cut(s) 176, 215, 319, 426, 672, 700, 813
TspGWI ACGGA 1 cut(s) 640
TspRI CASTG 4 cut(s) 34, 205, 412, 544
VspI ATTAAT 1 cut(s) 759
XagI CCTNNNNNAGG 1 cut(s) 459
XapI RAATTY 3 cut(s) 113, 222, 676
XceI RCATGY 1 cut(s) 317
XmnI GAANNNNTTC 2 cut(s) 188, 804
XspI CTAG 3 cut(s) 261, 383, 479
ZraI GACGTC 1 cut(s) 433
ZrmI AGTACT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.