Rroxscaffold_7G00180040

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000429
Physical Location & Seq
Reverse (-)
19581489 .. 19582637
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180040.1

Sequence Viewer

Length: 537 bp
ATGGGTATAAACTATTACCAACCATGCCCGGACTCAACATTAACCTTGGGATTACTTAAACATTATGATGGAAATCTCTTAACTTTTCTTCTACAAGAACAAGTTCAGGACCTTCAAGTCTTCAAATTAAGGAGCAATGGTTGGCAGTTGAGCCTGTCCCTCATGCCTTCTAATGGGAAGTTAAGCAGTGCGGAGCACAGAGTTGCGGCAAACAAAAAGGTTTCAAGGATGTGGGAGTGGTCAAATTTTGCTGGGCCTGCAATTAAGGCGATTAACTCCTCAAACTTCGAGTCAATGCTCGAGGGAAGCTTCTCGATCGTTCCCAAGTCAGCTCCCGCTCCAGTCCGCATTAATTGTTGGGTCAAACTCCTCTACGGAATTTTTCACCTCCAACAAAGGATGTATGTCACCAGCTTCATCCTTCCTTCTGGAAACTGCCACATTGAACCTGCAAAAGCACTTCTTGTTGAGGACTGCAGCACTCCACTCTATAGAGATTCTATATATACAAAGACTTTCCTAGCACCTATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

178

Amino Acids

20.04

Weight (kDa)

8.67

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 3 - 77 4.6e-11 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 457
AccBSI CCGCTC 1 cut(s) 338
AciI CCGC 4 cut(s) 191, 206, 336, 346
AcsI RAATTY 2 cut(s) 244, 378
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 4 cut(s) 116, 124, 225, 446
AluBI AGCT 3 cut(s) 309, 332, 414
AluI AGCT 3 cut(s) 309, 332, 414
Alw21I GWGCWC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 477
ApoI RAATTY 2 cut(s) 244, 378
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AseI ATTAAT 1 cut(s) 351
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 109, 254
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 377, 400
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 489
BccI CCATC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 29
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 3 cut(s) 475, 490, 528
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 2 cut(s) 207, 478
BlsI GCNGC 2 cut(s) 208, 479
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 109, 254
BmrFI CCNGG 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 142
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 234, 405, 417
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 268, 359
BseXI GCAGC 1 cut(s) 489
BseYI CCCAGC 1 cut(s) 251
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 4 cut(s) 191, 206, 336, 346
BspANI GGCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 479
BspMI ACCTGC 1 cut(s) 457
BsrBI CCGCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 258
BstF5I GGATG 3 cut(s) 234, 405, 417
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 257, 266
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 3 cut(s) 475, 490, 528
BstV1I GCAGC 1 cut(s) 489
BstV2I GAAGAC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 3 cut(s) 234, 405, 417
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 109, 254
CviAII CATG 2 cut(s) 24, 163
CviJI RGCY 5 cut(s) 153, 256, 309, 332, 414
CviKI_1 RGCY 5 cut(s) 153, 256, 309, 332, 414
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 27, 166
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 1 cut(s) 142
FatI CATG 2 cut(s) 23, 162
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 207, 478
FokI GGATG 3 cut(s) 241, 404, 412
Fsp4HI GCNGC 2 cut(s) 207, 478
FspBI CTAG 1 cut(s) 521
GluI GCNGC 2 cut(s) 207, 478
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 29
Hin1II CATG 2 cut(s) 27, 166
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 3 cut(s) 32, 290, 497
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 377, 400
Hpy188III TCNNGA 3 cut(s) 107, 313, 429
HpyAV CCTTC 4 cut(s) 122, 177, 431, 435
HpyCH4V TGCA 3 cut(s) 260, 452, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 266
Hsp92II CATG 2 cut(s) 27, 166
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 4 cut(s) 132, 193, 337, 343
LpnPI CCDG 9 cut(s) 42, 92, 167, 237, 270, 354, 414, 424, 462
Lsp1109I GCAGC 1 cut(s) 489
MaeI CTAG 1 cut(s) 521
MaeIII GTNAC 1 cut(s) 406
MalI GATC 1 cut(s) 317
MbiI CCGCTC 1 cut(s) 338
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 80, 112
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 5 cut(s) 125, 244, 261, 352, 378
MlyI GAGTC 2 cut(s) 26, 299
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 6 cut(s) 170, 289, 295, 380, 398, 463
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 8 cut(s) 41, 57, 80, 128, 182, 264, 273, 351
MslI CAYNNNNRTG 1 cut(s) 66
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 257, 266
NciI CCSGG 1 cut(s) 29
NdeII GATC 1 cut(s) 315
NlaIII CATG 2 cut(s) 27, 166
NmuCI GTSAC 1 cut(s) 406
PaeR7I CTCGAG 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 497
PkrI GCNGC 2 cut(s) 208, 479
Ple19I CGATCG 1 cut(s) 318
PleI GAGTC 2 cut(s) 26, 298
PpsI GAGTC 2 cut(s) 26, 298
PpuMI RGGWCCY 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 109, 254
PspPPI RGGWCCY 1 cut(s) 109
PspXI VCTCGAGB 1 cut(s) 299
PstI CTGCAG 1 cut(s) 479
PvuI CGATCG 1 cut(s) 318
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 8 cut(s) 41, 57, 80, 128, 182, 264, 273, 351
SatI GCNGC 2 cut(s) 207, 478
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 2 cut(s) 109, 254
SchI GAGTC 2 cut(s) 26, 299
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 198
SetI ASST 9 cut(s) 47, 114, 222, 311, 334, 390, 416, 451, 529
SfcI CTRYAG 3 cut(s) 475, 490, 528
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 109
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 5 cut(s) 125, 244, 261, 352, 378
SsiI CCGC 4 cut(s) 191, 206, 336, 346
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 45
TaqI TCGA 3 cut(s) 288, 300, 314
TasI AATT 5 cut(s) 125, 244, 261, 352, 378
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 8 cut(s) 41, 57, 80, 128, 182, 264, 273, 351
Tru9I TTAA 8 cut(s) 41, 57, 80, 128, 182, 264, 273, 351
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 406
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 2 cut(s) 244, 378
XhoI CTCGAG 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.