Rw7G008210

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000429
Physical Location & Seq
Forward (+)
7515739 .. 7517102
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008210.1

Sequence Viewer

Length: 921 bp
ATGGAGAAGCTTGTTCCAAACTGGTACAGTGCTGCTCAACCCTTGCCTGAGACTTGCATATTCCCACCTGATGCAAGACCAGGGAAGTTTAGCATTGATATATCACAAGGTCATGATCGAGCTCGTATAATCCAGCATATACTTGAGGCTAGCCAAGAATTCGGATTCTTTCGGGTAATCAACCATTGCATACCAGAAGCTTTGATGAATGACACAATGGATGTGCTGAAGGAGTTCTTTGACAGTGTTAATTATGATTGGGAGGAAATTCATCTTTGGCGCGATTTTATCCGACACCCTTTAACTAGATATACAATCTGTAATTACAGCAATCTTTATCTATGTTATTTCAGAGAGCATGTTAGCAAATGTTTCATCGACGTGAAGGAAGTGGCTTTGAATATTTTGAAGCTGACCGGTGAAGGACTAGGGATTGGATCAGAGTATTTCAGTGATGAACTTAGCAAAGAGACCGACGTCTTTGTTAATAACTATCCACCTTGTCCAGGCCCAAGTTTGACACTAGGAATAACTAAACACTCTGACCCACAGCTCATCACAATTTTACATCAAGGGGATGTCAGTGGCCTTCAAGTTTTCAAGGATGGGGAATGGATTGGACTGGAACCTACTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTAGTAATGGAAAGCTCAAGTGTGATGAACATCAAGTAGTGACAAATTCAAGTACTGTTTGGACGACGTTTGGATTTTTCATCACACCCTCCCCTGATTGCTGTATAGAACCTGCAGCAGCTCTCATTAATGCAAGCAATCCCCGACTCTATAAAGGCTTCCGATATGAAGAGTTTCCTGCCAACTACTTCAGGAAGCAGGGGAAAACCGAAGTTGTGCTTGAACCCTTTGAAATCGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

306

Amino Acids

34.93

Weight (kDa)

5.08

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 32 - 81 2.9e-11 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 159 - 249 1.2e-24 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 480
Acc36I ACCTGC 1 cut(s) 796
AccII CGCG 1 cut(s) 282
AclWI GGATC 2 cut(s) 445, 680
AcsI RAATTY 3 cut(s) 158, 267, 721
AcuI CTGAAG 2 cut(s) 248, 850
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 2 cut(s) 26, 730
AfiI CCNNNNNNNGG 1 cut(s) 506
AgeI ACCGGT 1 cut(s) 416
AgsI TTSAA 8 cut(s) 400, 409, 593, 601, 636, 726, 899, 908
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 79, 505
AluBI AGCT 7 cut(s) 10, 122, 200, 412, 553, 691, 797
AluI AGCT 7 cut(s) 10, 122, 200, 412, 553, 691, 797
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 44, 464
AlwI GGATC 2 cut(s) 445, 680
AoxI GGCC 2 cut(s) 508, 586
ApeKI GCWGC 3 cut(s) 32, 791, 794
ApoI RAATTY 3 cut(s) 158, 267, 721
AseI ATTAAT 1 cut(s) 804
AsiGI ACCGGT 1 cut(s) 416
Asp700I GAANNNNTTC 2 cut(s) 233, 849
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 431
AsuNHI GCTAGC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 3 cut(s) 19, 803, 806
BccI CCATC 1 cut(s) 599
BciT130I CCWGG 2 cut(s) 81, 507
BcoDI GTCTC 2 cut(s) 44, 464
BfaI CTAG 4 cut(s) 150, 306, 428, 524
BfmI CTRYAG 1 cut(s) 789
BfuAI ACCTGC 1 cut(s) 796
BisI GCNGC 3 cut(s) 33, 792, 795
BlsI GCNGC 3 cut(s) 34, 793, 796
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 2 cut(s) 81, 507
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 2 cut(s) 81, 507
BmsI GCATC 1 cut(s) 61
BmtI GCTAGC 1 cut(s) 153
BoxI GACNNNNGTC 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 164, 677
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 3 cut(s) 26, 627, 648
Bse3DI GCAATG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 2 cut(s) 81, 507
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 3 cut(s) 226, 583, 610
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 3 cut(s) 26, 627, 648
BseXI GCAGC 3 cut(s) 19, 803, 806
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 2 cut(s) 510, 588
BshTI ACCGGT 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 2 cut(s) 44, 464
BsnI GGCC 2 cut(s) 510, 588
Bso31I GGTCTC 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 115, 437, 672
BspANI GGCC 2 cut(s) 510, 588
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 282
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 627
BspMAI CTGCAG 1 cut(s) 793
BspMI ACCTGC 1 cut(s) 796
BspOI GCTAGC 1 cut(s) 153
BspPI GGATC 2 cut(s) 445, 680
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 3 cut(s) 26, 627, 648
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 3 cut(s) 115, 437, 672
BssNI GRCGYC 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 81, 507
Bst4CI ACNGT 3 cut(s) 29, 245, 733
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 151, 811
BstDEI CTNAG 2 cut(s) 48, 461
BstENI CCTNNNNNAGG 1 cut(s) 504
BstF5I GGATG 3 cut(s) 226, 583, 610
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 3 cut(s) 118, 440, 675
BstMAI GTCTC 2 cut(s) 44, 464
BstMBI GATC 3 cut(s) 115, 437, 672
BstNI CCWGG 2 cut(s) 81, 507
BstNSI RCATGY 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 79, 505
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 19, 803, 806
BsuRI GGCC 2 cut(s) 510, 588
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 3 cut(s) 226, 583, 610
BtsIMutI CAGTG 4 cut(s) 34, 250, 457, 589
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 2 cut(s) 151, 811
CciI TCATGA 1 cut(s) 112
CfoI GCGC 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 509
Csp6I GTAC 2 cut(s) 25, 729
CspAI ACCGGT 1 cut(s) 416
CviAII CATG 2 cut(s) 113, 359
CviQI GTAC 2 cut(s) 25, 729
DdeI CTNAG 2 cut(s) 48, 461
DpnI GATC 3 cut(s) 117, 439, 674
DpnII GATC 3 cut(s) 115, 437, 672
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 464
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 2 cut(s) 248, 850
EcoICRI GAGCTC 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 79, 505
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 2 cut(s) 116, 362
FalI AAGNNNNNCTT 4 cut(s) 221, 253, 879, 911
FatI CATG 2 cut(s) 112, 358
Fnu4HI GCNGC 3 cut(s) 33, 792, 795
FokI GGATG 3 cut(s) 233, 590, 617
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 3 cut(s) 33, 792, 795
FspBI CTAG 4 cut(s) 150, 306, 428, 524
GlaI GCGC 1 cut(s) 281
GluI GCNGC 3 cut(s) 33, 792, 795
HaeIII GGCC 2 cut(s) 510, 588
HapII CCGG 1 cut(s) 417
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 2 cut(s) 116, 362
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 2 cut(s) 8, 198
HinfI GANTC 2 cut(s) 165, 822
HpaI GTTAAC 1 cut(s) 652
HpaII CCGG 1 cut(s) 417
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 6 cut(s) 164, 293, 353, 442, 544, 839
Hpy188III TCNNGA 2 cut(s) 113, 868
Hpy8I GTNNAC 1 cut(s) 652
Hpy99I CGWCG 3 cut(s) 383, 479, 745
HpyAV CCTTC 4 cut(s) 223, 379, 416, 599
HpyCH4III ACNGT 3 cut(s) 29, 245, 733
HpyCH4IV ACGT 3 cut(s) 381, 477, 743
HpyCH4V TGCA 5 cut(s) 57, 74, 189, 791, 809
HpyF3I CTNAG 2 cut(s) 48, 461
HpySE526I ACGT 3 cut(s) 381, 477, 743
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 2 cut(s) 116, 362
HspAI GCGC 1 cut(s) 280
KspAI GTTAAC 1 cut(s) 652
Kzo9I GATC 3 cut(s) 115, 437, 672
Lsp1109I GCAGC 3 cut(s) 19, 803, 806
LweI GCATC 1 cut(s) 61
MaeI CTAG 4 cut(s) 150, 306, 428, 524
MaeII ACGT 3 cut(s) 381, 477, 743
MaeIII GTNAC 1 cut(s) 715
MalI GATC 3 cut(s) 117, 439, 674
MboI GATC 3 cut(s) 115, 437, 672
MboII GAAGA 1 cut(s) 857
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 7 cut(s) 158, 250, 267, 322, 561, 665, 721
MlyI GAGTC 1 cut(s) 816
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 3 cut(s) 139, 256, 775
MroXI GAANNNNTTC 2 cut(s) 233, 849
MseI TTAA 5 cut(s) 249, 302, 486, 651, 804
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 2 cut(s) 81, 507
MvaI CCWGG 2 cut(s) 81, 507
MvnI CGCG 1 cut(s) 282
NdeII GATC 3 cut(s) 115, 437, 672
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 116, 362
NlaIV GGNNCC 1 cut(s) 627
NmuCI GTSAC 1 cut(s) 715
NspI RCATGY 1 cut(s) 362
PagI TCATGA 1 cut(s) 112
PdmI GAANNNNTTC 2 cut(s) 233, 849
PfeI GAWTC 1 cut(s) 165
PinAI ACCGGT 1 cut(s) 416
PkrI GCNGC 3 cut(s) 34, 793, 796
PleI GAGTC 1 cut(s) 816
PpsI GAGTC 1 cut(s) 816
PshAI GACNNNNGTC 1 cut(s) 476
PshBI ATTAAT 1 cut(s) 804
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 79, 505
PspGI CCWGG 2 cut(s) 79, 505
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 509
PstI CTGCAG 1 cut(s) 793
RsaI GTAC 2 cut(s) 26, 730
RsaNI GTAC 2 cut(s) 25, 729
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 5 cut(s) 249, 302, 486, 651, 804
SatI GCNGC 3 cut(s) 33, 792, 795
Sau3AI GATC 3 cut(s) 115, 437, 672
Sau96I GGNCC 1 cut(s) 509
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 1 cut(s) 816
ScrFI CCNGG 2 cut(s) 81, 507
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 143, 692
SmoI CTYRAG 2 cut(s) 143, 692
Sse9I AATT 7 cut(s) 158, 250, 267, 322, 561, 665, 721
SspI AATATT 1 cut(s) 403
SspMI CTAG 4 cut(s) 150, 306, 428, 524
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 79, 505
TaaI ACNGT 3 cut(s) 29, 245, 733
TaiI ACGT 3 cut(s) 384, 480, 746
TaqI TCGA 3 cut(s) 118, 378, 912
TaqII GACCGA 1 cut(s) 488
TasI AATT 7 cut(s) 158, 250, 267, 322, 561, 665, 721
TatI WGTACW 1 cut(s) 728
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 5 cut(s) 249, 302, 486, 651, 804
Tru9I TTAA 5 cut(s) 249, 302, 486, 651, 804
TscAI CASTG 4 cut(s) 34, 250, 457, 589
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 3 cut(s) 32, 791, 794
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 7 cut(s) 221, 260, 364, 471, 717, 745, 858
TspGWI ACGGA 1 cut(s) 685
TspRI CASTG 4 cut(s) 34, 250, 457, 589
VspI ATTAAT 1 cut(s) 804
XagI CCTNNNNNAGG 1 cut(s) 504
XapI RAATTY 3 cut(s) 158, 267, 721
XceI RCATGY 1 cut(s) 362
XmnI GAANNNNTTC 2 cut(s) 233, 849
XspI CTAG 4 cut(s) 150, 306, 428, 524
ZraI GACGTC 1 cut(s) 478
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.