RchiOBHm_Chr7g0188451

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000429
Physical Location & Seq
Forward (+)
7951794 .. 7952569
776 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16826

Sequence Viewer

Length: 570 bp
ATGTTGTCAAATTATCGAGTAACTAGATATACAATCTGTAATTACAGCAATCTTTATCTATGTTATTTCAGAGAGCATGTTAGCAAATGTTTCATCGACGTGAAGGAAGTGGCTTTGAATATTTTGAAGCTGACCGGTGAAGGACTAGGGATAGGATCAGAGTATTTCAGTGATGAACTTAGCAAAGAGACCGACGTCTTTCTCATCACAATTTTACATCAAGGGGATGTCAGTGGCCTTCAAGTTTTCAAGGATGGGGAACGGATTGGACTGGAACCTACTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTAGTAATGGAAAGCTCAAGTGTGATGAACATCAAGTAGTGACAAATTCAAGTACTGTTTGGACGACGTTTGGATTTTTCATCACACCCTCCCCTGATTGCTGTATAGAACCTGCAGCAGCTCTCATTAATGCAAGCAATCCCCGACTCTATAAAGGCTTCCGATATGAAGAGTTTCCTGCCAACTACTTTAGGAAGCAGGGGAAAACCGAAGTTGTGCTTGAACCCTTTGAAATCGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

189

Amino Acids

21.42

Weight (kDa)

5.27

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 60 - 132 1.5e-13 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 445
AclWI GGATC 2 cut(s) 163, 329
AcsI RAATTY 1 cut(s) 370
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 379
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 8 cut(s) 118, 127, 242, 250, 285, 375, 548, 557
AjiI CACGTC 1 cut(s) 100
AluBI AGCT 3 cut(s) 130, 340, 446
AluI AGCT 3 cut(s) 130, 340, 446
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 163, 329
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 440, 443
ApoI RAATTY 1 cut(s) 370
AseI ATTAAT 1 cut(s) 453
AsiGI ACCGGT 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 149
BbvI GCAGC 2 cut(s) 452, 455
BccI CCATC 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 2 cut(s) 24, 146
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 445
BisI GCNGC 2 cut(s) 441, 444
BlsI GCNGC 2 cut(s) 442, 445
BmcAI AGTACT 1 cut(s) 379
BmgBI CACGTC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 276
BoxI GACNNNNGTC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 276, 297
Bse8I GATNNNNATC 1 cut(s) 354
BseGI GGATG 2 cut(s) 232, 259
BseJI GATNNNNATC 1 cut(s) 354
BseNI ACTGG 2 cut(s) 276, 297
BseXI GCAGC 2 cut(s) 452, 455
BshFI GGCC 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 134
BsiSI CCGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 182
Bsp143I GATC 2 cut(s) 155, 321
BspANI GGCC 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 2 cut(s) 163, 329
BspTNI GGTCTC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 2 cut(s) 276, 297
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 2 cut(s) 155, 321
BssNI GRCGYC 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 2 cut(s) 232, 259
BstKTI GATC 2 cut(s) 158, 324
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 155, 321
BstNSI RCATGY 1 cut(s) 80
BstPAI GACNNNNGTC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 2 cut(s) 452, 455
BsuRI GGCC 1 cut(s) 237
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 232, 259
BtsIMutI CAGTG 2 cut(s) 175, 238
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 134
Csp6I GTAC 1 cut(s) 378
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 1 cut(s) 77
CviJI RGCY 7 cut(s) 113, 130, 237, 309, 340, 446, 483
CviKI_1 RGCY 7 cut(s) 113, 130, 237, 309, 340, 446, 483
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 157, 323
DpnII GATC 2 cut(s) 155, 321
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 182
FaeI CATG 1 cut(s) 80
FaiI YATR 7 cut(s) 30, 61, 78, 305, 431, 477, 492
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 441, 444
FokI GGATG 2 cut(s) 239, 266
Fsp4HI GCNGC 2 cut(s) 441, 444
FspBI CTAG 2 cut(s) 24, 146
GluI GCNGC 2 cut(s) 441, 444
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 80
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 471
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 3 cut(s) 71, 160, 488
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 3 cut(s) 101, 197, 394
HpyAV CCTTC 3 cut(s) 97, 134, 248
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 3 cut(s) 99, 195, 392
HpyCH4V TGCA 2 cut(s) 440, 458
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 3 cut(s) 99, 195, 392
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 80
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 155, 321
LpnPI CCDG 7 cut(s) 148, 257, 278, 432, 450, 509, 516
Lsp1109I GCAGC 2 cut(s) 452, 455
MaeI CTAG 2 cut(s) 24, 146
MaeII ACGT 3 cut(s) 99, 195, 392
MaeIII GTNAC 2 cut(s) 19, 364
MalI GATC 2 cut(s) 157, 323
MboI GATC 2 cut(s) 155, 321
MboII GAAGA 1 cut(s) 506
MluCI AATT 5 cut(s) 10, 40, 210, 314, 370
MlyI GAGTC 1 cut(s) 465
MnlI CCTC 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 2 cut(s) 300, 453
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 1 cut(s) 135
NdeII GATC 2 cut(s) 155, 321
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 364
NspI RCATGY 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 498
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 2 cut(s) 442, 445
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PshAI GACNNNNGTC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 276
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 300, 453
SatI GCNGC 2 cut(s) 441, 444
Sau3AI GATC 2 cut(s) 155, 321
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 1 cut(s) 465
SetI ASST 8 cut(s) 102, 132, 198, 280, 342, 395, 439, 448
SfcI CTRYAG 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 5 cut(s) 10, 40, 210, 314, 370
SspI AATATT 1 cut(s) 121
SspMI CTAG 2 cut(s) 24, 146
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 3 cut(s) 102, 198, 395
TaqI TCGA 3 cut(s) 16, 96, 561
TaqII GACCGA 1 cut(s) 206
TasI AATT 5 cut(s) 10, 40, 210, 314, 370
TatI WGTACW 1 cut(s) 377
Tru1I TTAA 2 cut(s) 300, 453
Tru9I TTAA 2 cut(s) 300, 453
TscAI CASTG 2 cut(s) 175, 238
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 2 cut(s) 440, 443
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 5 cut(s) 82, 189, 366, 394, 507
TspGWI ACGGA 2 cut(s) 277, 334
TspRI CASTG 2 cut(s) 175, 238
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 1 cut(s) 370
XceI RCATGY 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 2 cut(s) 24, 146
ZraI GACGTC 1 cut(s) 196
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.