Rh6AG306700

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000429
Physical Location & Seq
Forward (+)
50470985 .. 50472911
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG306700.1

Sequence Viewer

Length: 795 bp
ATGAATGACACAATGGATGTGTTCAAGGAGTTCTTTGAGTTGCCTCTAGAGGAAAAGAGGGCAAGCATCTACTCTGATGACCCCAACAAAGTCTGCAAGCTCGTACATAGCAGTGTTAATTATGATTGGGAGGAAGTTCATCTTTGGCGCGATTTCCTCCGACACCCTTGTGAACCTTTAGAAAAATTCATGCCAATTTGGCCTCGGAAACCTATTAAATATCGAGAGCATGTTAGCAGATGTTTCACCCAAGTGAAGAAAGTGGCTTTGGACATTTTGGAGTTGATCGGTGAAGGACTTGGGATAGGATCAGAGTATTTCAATGATGAACTTAGCAAAGAGACTGACATCTTTGTTAATCACTATCCACCTTGTCCTGACCCAAGTTTGACACTTGGAATAACTAAACACTCTGACCCACAGCTCATCACAATTTTACTTCAAGGGGATGTCAGTGGCCTTCAAGTTCTCAATAAGGATGGCGAATGGATTGGAGTGGAACCTATTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCCTTAGTAATGGAAAGCTCAAGTGTGCTGAACATCGAGTGGTGACGAATTCAAGTACTGTTCGGACGACGATTGGATTTTTCATTACACCCTCCCCTGACTGCTATATAGAACCTGCAGCAGCTCTTATTAATGCAAGCAATCCCCGACTCTATAAAGGCTTCCGATATGAAGAGTTTCGTGCCAACTACTTTAGGAAGCAGGGGAAAACCGAAGTTGTGCTTGAACCCTTCAAAATCGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

264

Amino Acids

30.33

Weight (kDa)

5.71

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 117 - 213 2.5e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 670
AccII CGCG 1 cut(s) 150
AclWI GGATC 3 cut(s) 316, 541, 554
AcsI RAATTY 2 cut(s) 185, 595
AfaI GTAC 2 cut(s) 105, 604
AgsI TTSAA 8 cut(s) 25, 322, 443, 464, 510, 600, 773, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AleI CACNNNNGTG 2 cut(s) 168, 251
AluBI AGCT 4 cut(s) 100, 424, 565, 671
AluI AGCT 4 cut(s) 100, 424, 565, 671
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 3 cut(s) 316, 541, 554
AoxI GGCC 2 cut(s) 200, 457
ApeKI GCWGC 2 cut(s) 665, 668
ApoI RAATTY 2 cut(s) 185, 595
AseI ATTAAT 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 723
AspLEI GCGC 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 238, 302, 601
BamHI GGATCC 1 cut(s) 546
BbvI GCAGC 2 cut(s) 677, 680
BccI CCATC 1 cut(s) 473
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 663
BfuAI ACCTGC 1 cut(s) 670
BglI GCCNNNNNGGC 1 cut(s) 199
BisI GCNGC 2 cut(s) 666, 669
BlsI GCNGC 2 cut(s) 667, 670
BmcAI AGTACT 1 cut(s) 604
BmiI GGNNCC 2 cut(s) 501, 548
BmsI GCATC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 3 cut(s) 22, 454, 484
BseNI ACTGG 1 cut(s) 522
BseXI GCAGC 2 cut(s) 677, 680
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 202, 459
BsmAI GTCTC 1 cut(s) 335
BsnI GGCC 2 cut(s) 202, 459
Bsp143I GATC 3 cut(s) 285, 308, 546
BspANI GGCC 2 cut(s) 202, 459
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 501, 548
BspMAI CTGCAG 1 cut(s) 667
BspMI ACCTGC 1 cut(s) 670
BspPI GGATC 3 cut(s) 316, 541, 554
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 3 cut(s) 285, 308, 546
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 1 cut(s) 714
BstC8I GCNNGC 3 cut(s) 64, 98, 685
BstDEI CTNAG 3 cut(s) 332, 551, 792
BstF5I GGATG 3 cut(s) 22, 454, 484
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 3 cut(s) 288, 311, 549
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 3 cut(s) 285, 308, 546
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 663
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 677, 680
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 2 cut(s) 202, 459
BtsCI GGATG 3 cut(s) 22, 454, 484
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 460
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 3 cut(s) 64, 98, 685
CfoI GCGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 104, 603
CviAII CATG 2 cut(s) 190, 230
CviJI RGCY 9 cut(s) 100, 202, 266, 424, 459, 534, 565, 671, 708
CviKI_1 RGCY 9 cut(s) 100, 202, 266, 424, 459, 534, 565, 671, 708
CviQI GTAC 2 cut(s) 104, 603
DdeI CTNAG 3 cut(s) 332, 551, 792
DpnI GATC 3 cut(s) 287, 310, 548
DpnII GATC 3 cut(s) 285, 308, 546
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
EcoRI GAATTC 1 cut(s) 595
FaeI CATG 2 cut(s) 193, 233
FaiI YATR 9 cut(s) 108, 123, 191, 231, 530, 654, 656, 702, 717
FalI AAGNNNNNCTT 6 cut(s) 17, 49, 126, 158, 753, 785
FatI CATG 2 cut(s) 189, 229
Fnu4HI GCNGC 2 cut(s) 666, 669
FokI GGATG 3 cut(s) 29, 461, 491
Fsp4HI GCNGC 2 cut(s) 666, 669
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 149
GluI GCNGC 2 cut(s) 666, 669
HaeIII GGCC 2 cut(s) 202, 459
HhaI GCGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 193, 233
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 2 cut(s) 696, 788
HpaI GTTAAC 1 cut(s) 526
HphI GGTGA 3 cut(s) 238, 302, 601
Hpy166II GTNNAC 2 cut(s) 173, 526
Hpy188I TCNGA 7 cut(s) 76, 161, 207, 313, 415, 612, 713
Hpy188III TCNNGA 3 cut(s) 47, 224, 377
Hpy8I GTNNAC 2 cut(s) 173, 526
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 3 cut(s) 287, 470, 787
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4V TGCA 3 cut(s) 96, 665, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 3 cut(s) 332, 551, 792
Hsp92II CATG 2 cut(s) 193, 233
HspAI GCGC 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 3 cut(s) 285, 308, 546
LpnPI CCDG 5 cut(s) 390, 503, 657, 675, 734
Lsp1109I GCAGC 2 cut(s) 677, 680
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 589
MalI GATC 3 cut(s) 287, 310, 548
MboI GATC 3 cut(s) 285, 308, 546
MboII GAAGA 2 cut(s) 268, 731
MflI RGATCY 1 cut(s) 546
MluCI AATT 6 cut(s) 118, 185, 195, 432, 539, 595
MlyI GAGTC 1 cut(s) 690
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 7 cut(s) 43, 51, 54, 124, 167, 213, 649
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 5 cut(s) 117, 216, 357, 525, 678
MslI CAYNNNNRTG 3 cut(s) 111, 168, 251
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 3 cut(s) 285, 308, 546
NlaIII CATG 2 cut(s) 193, 233
NlaIV GGNNCC 2 cut(s) 501, 548
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 1 cut(s) 233
OliI CACNNNNGTG 2 cut(s) 168, 251
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 1 cut(s) 788
PkrI GCNGC 2 cut(s) 667, 670
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
PshBI ATTAAT 1 cut(s) 678
PspN4I GGNNCC 2 cut(s) 501, 548
PstI CTGCAG 1 cut(s) 667
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 2 cut(s) 105, 604
RsaNI GTAC 2 cut(s) 104, 603
RseI CAYNNNNRTG 3 cut(s) 111, 168, 251
SaqAI TTAA 5 cut(s) 117, 216, 357, 525, 678
SatI GCNGC 2 cut(s) 666, 669
Sau3AI GATC 3 cut(s) 285, 308, 546
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 1 cut(s) 690
SetI ASST 9 cut(s) 102, 178, 214, 373, 426, 505, 567, 664, 673
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 663
SmiMI CAYNNNNRTG 3 cut(s) 111, 168, 251
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 6 cut(s) 118, 185, 195, 432, 539, 595
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 607
TaqI TCGA 3 cut(s) 223, 583, 786
TasI AATT 6 cut(s) 118, 185, 195, 432, 539, 595
TatI WGTACW 1 cut(s) 602
TfiI GAWTC 1 cut(s) 788
Tru1I TTAA 5 cut(s) 117, 216, 357, 525, 678
Tru9I TTAA 5 cut(s) 117, 216, 357, 525, 678
TscAI CASTG 2 cut(s) 118, 460
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 665, 668
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 6 cut(s) 17, 128, 178, 342, 619, 732
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 2 cut(s) 118, 460
VspI ATTAAT 1 cut(s) 678
XapI RAATTY 2 cut(s) 185, 595
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.