Rmu_co8483209.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8483209.1
OG0000429
Physical Location & Seq
Forward (+)
582 .. 1912
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8483209.1_g000001.1.cds

Sequence Viewer

Length: 939 bp
atggagaagcttgtttctagctggtacaataatgttcaacccttgcccgagacttacatattcccacccgatgcaagaccggggaagcttagcactcttccttcatctgacaacattccagtaatcaaccatggcatatcagaaaatttgttgcatgacaccatggatgtgttcagggagttttttgctttgcctccagaagacaaggcaagcttcttctctgaggaccccaacaaactctgcaggctcataactagcaccggaaattatgacagggagaatgttcatctttggcgcgatgccctccgacacccttgtcaccctttagaaaaattcattccactttggcctcaacaaccgcttaaatatcgagagcatgttggcaaatgttccacccaagtgaggaaagtagctttgaacattttagacttgatcagtgaaggacttgggattggatatgggcacttcagcgatgaacttagccaagagactctactctcagttaattattatccaccttgtccagatccaagtttgacattaggaataactaaacactgtgatccaaacctcatcacaattttacttcaaggggatgtacatggccttcaggtttttaaggatgggaaatggattggtgtggaacctcttccacaaggactagtggttaacataggctatcagttacagatcataagtaatgggaagctgaagtgtgctgaacatcgagcagtgacaaattcaagtaatgctcggacatctgctgcatttttcattgcaccttcccaagattgcaatatacaacctgcaacagctcttatcaatgcaagtaatcctcaaatctataagggcttccaatacaaagagttcctttccaactacctaatgaagcagggcaacaccgaagttgtacttgagccctttaaactccaaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

312

Amino Acids

35.11

Weight (kDa)

6.06

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 315
Acc36I ACCTGC 1 cut(s) 814
AccII CGCG 1 cut(s) 297
AciI CCGC 1 cut(s) 359
AclWI GGATC 2 cut(s) 521, 557
AcsI RAATTY 4 cut(s) 145, 332, 739, 933
AcuI CTGAAG 3 cut(s) 451, 593, 731
AfaI GTAC 3 cut(s) 26, 600, 912
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 4 cut(s) 38, 418, 590, 744
AhlI ACTAGT 1 cut(s) 661
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 7 cut(s) 10, 21, 88, 213, 413, 709, 815
AluI AGCT 7 cut(s) 10, 21, 88, 213, 413, 709, 815
Alw26I GTCTC 2 cut(s) 44, 482
AlwI GGATC 2 cut(s) 521, 557
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 2 cut(s) 347, 604
ApeKI GCWGC 1 cut(s) 764
ApoI RAATTY 4 cut(s) 145, 332, 739, 933
Asp700I GAANNNNTTC 1 cut(s) 648
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 311
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 921
BarI GAAGNNNNNNTAC 2 cut(s) 591, 623
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 751
BccI CCATC 1 cut(s) 617
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 44, 482
BcuI ACTAGT 1 cut(s) 661
BfaI CTAG 3 cut(s) 18, 255, 662
BfmI CTRYAG 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 814
BisI GCNGC 1 cut(s) 765
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 766
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 228, 645
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 61, 289
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 80, 130, 162
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 774
BseDI CCNNGG 3 cut(s) 80, 130, 162
BseGI GGATG 3 cut(s) 172, 601, 628
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 213, 513
BseNI ACTGG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 1 cut(s) 751
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 2 cut(s) 349, 606
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 80, 261
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 2 cut(s) 44, 482
BsnI GGCC 2 cut(s) 349, 606
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 465, 921
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 4 cut(s) 432, 526, 562, 690
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp19I CCATGG 2 cut(s) 130, 162
BspACI CCGC 1 cut(s) 359
BspANI GGCC 2 cut(s) 349, 606
BspCNI CTCAG 2 cut(s) 214, 512
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 228, 645
BspMAI CTGCAG 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 814
BspPI GGATC 2 cut(s) 521, 557
BsrDI GCAATG 1 cut(s) 774
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 3 cut(s) 80, 130, 162
BssMI GATC 4 cut(s) 432, 526, 562, 690
BssT1I CCWWGG 2 cut(s) 130, 162
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 2 cut(s) 102, 654
BstAUI TGTACA 1 cut(s) 598
BstC8I GCNNGC 2 cut(s) 211, 245
BstDEI CTNAG 4 cut(s) 89, 222, 479, 499
BstDSI CCRYGG 2 cut(s) 130, 162
BstF5I GGATG 3 cut(s) 172, 601, 628
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 4 cut(s) 435, 529, 565, 693
BstMAI GTCTC 2 cut(s) 44, 482
BstMBI GATC 4 cut(s) 432, 526, 562, 690
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 465
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 751
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuRI GGCC 2 cut(s) 349, 606
BtgI CCRYGG 2 cut(s) 130, 162
BtgZI GCGATG 2 cut(s) 312, 486
BtsCI GGATG 3 cut(s) 172, 601, 628
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 442, 556, 738
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 2 cut(s) 211, 245
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 25, 599, 911
CviAII CATG 5 cut(s) 131, 155, 163, 377, 602
CviQI GTAC 3 cut(s) 25, 599, 911
DdeI CTNAG 4 cut(s) 89, 222, 479, 499
DpnI GATC 4 cut(s) 434, 528, 564, 692
DpnII GATC 4 cut(s) 432, 526, 562, 690
DraI TTTAAA 1 cut(s) 925
DrdI GACNNNNNNGTC 1 cut(s) 315
DseDI GACNNNNNNGTC 1 cut(s) 315
Eam1104I CTCTTC 2 cut(s) 102, 654
EarI CTCTTC 2 cut(s) 102, 654
Eco130I CCWWGG 2 cut(s) 130, 162
Eco24I GRGCYC 1 cut(s) 921
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 3 cut(s) 451, 593, 731
Eco88I CYCGRG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 130, 162
EcoT38I GRGCYC 1 cut(s) 921
ErhI CCWWGG 2 cut(s) 130, 162
FaeI CATG 5 cut(s) 134, 158, 166, 380, 605
FalI AAGNNNNNCTT 6 cut(s) 197, 229, 855, 887, 897, 929
FatI CATG 5 cut(s) 130, 154, 162, 376, 601
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 1 cut(s) 765
FokI GGATG 3 cut(s) 179, 608, 635
FriOI GRGCYC 1 cut(s) 921
Fsp4HI GCNGC 1 cut(s) 765
FspBI CTAG 3 cut(s) 18, 255, 662
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 765
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 349, 606
HapII CCGG 2 cut(s) 80, 261
HhaI GCGC 1 cut(s) 297
Hin1II CATG 5 cut(s) 134, 158, 166, 380, 605
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HindIII AAGCTT 3 cut(s) 8, 86, 211
HinfI GANTC 1 cut(s) 490
HpaI GTTAAC 1 cut(s) 670
HpaII CCGG 2 cut(s) 80, 261
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 5 cut(s) 109, 142, 223, 308, 756
Hpy188III TCNNGA 3 cut(s) 197, 371, 524
Hpy8I GTNNAC 1 cut(s) 670
HpyAV CCTTC 4 cut(s) 111, 434, 617, 792
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4V TGCA 8 cut(s) 74, 154, 243, 767, 779, 795, 809, 827
HpyF3I CTNAG 4 cut(s) 89, 222, 479, 499
Hsp92II CATG 5 cut(s) 134, 158, 166, 380, 605
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 432
KspAI GTTAAC 1 cut(s) 670
Kzo9I GATC 4 cut(s) 432, 526, 562, 690
Lsp1109I GCAGC 1 cut(s) 751
LweI GCATC 2 cut(s) 61, 289
MaeI CTAG 3 cut(s) 18, 255, 662
MaeIII GTNAC 3 cut(s) 317, 684, 733
MalI GATC 4 cut(s) 434, 528, 564, 692
MboI GATC 4 cut(s) 432, 526, 562, 690
MboII GAAGA 4 cut(s) 89, 208, 212, 641
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 2 cut(s) 465, 921
MluCI AATT 7 cut(s) 145, 265, 332, 505, 579, 739, 933
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 2 cut(s) 331, 900
MnlI CCTC 8 cut(s) 204, 217, 314, 360, 396, 581, 657, 846
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 5 cut(s) 363, 504, 618, 669, 924
MslI CAYNNNNRTG 2 cut(s) 167, 398
MspI CCGG 2 cut(s) 80, 261
MspR9I CCNGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 297
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 2 cut(s) 130, 162
NdeII GATC 4 cut(s) 432, 526, 562, 690
NlaIII CATG 5 cut(s) 134, 158, 166, 380, 605
NlaIV GGNNCC 2 cut(s) 228, 645
NmuCI GTSAC 2 cut(s) 317, 733
NspI RCATGY 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 648
PkrI GCNGC 1 cut(s) 766
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 228, 645
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PstI CTGCAG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 3 cut(s) 26, 600, 912
RsaNI GTAC 3 cut(s) 25, 599, 911
RseI CAYNNNNRTG 2 cut(s) 167, 398
SaqAI TTAA 5 cut(s) 363, 504, 618, 669, 924
SatI GCNGC 1 cut(s) 765
Sau3AI GATC 4 cut(s) 432, 526, 562, 690
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 465, 921
SfaNI GCATC 2 cut(s) 61, 289
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 167, 398
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SpeI ACTAGT 1 cut(s) 661
Sse9I AATT 7 cut(s) 145, 265, 332, 505, 579, 739, 933
SsiI CCGC 1 cut(s) 359
SspMI CTAG 3 cut(s) 18, 255, 662
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 2 cut(s) 130, 162
TaaI ACNGT 1 cut(s) 560
TaqI TCGA 2 cut(s) 370, 727
TasI AATT 7 cut(s) 145, 265, 332, 505, 579, 739, 933
TatI WGTACW 2 cut(s) 598, 910
Tru1I TTAA 5 cut(s) 363, 504, 618, 669, 924
Tru9I TTAA 5 cut(s) 363, 504, 618, 669, 924
TscAI CASTG 3 cut(s) 442, 563, 738
TseFI GTSAC 2 cut(s) 317, 733
TseI GCWGC 1 cut(s) 764
Tsp45I GTSAC 2 cut(s) 317, 733
TspDTI ATGAA 6 cut(s) 93, 275, 325, 489, 763, 902
TspRI CASTG 3 cut(s) 442, 563, 738
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 4 cut(s) 145, 332, 739, 933
XceI RCATGY 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 3 cut(s) 18, 255, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.