RchiOBHm_Chr6g0288451

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000429
Physical Location & Seq
Forward (+)
51719862 .. 51720187
326 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25881

Sequence Viewer

Length: 219 bp
ATGCAATTCTGGCCTGAGAAACCATCTAGATACAGAGGTCATTGGAAGTTATTCTGTGGAGGCGAGGAAGCTAAGTTTGGCCTTTTGGAACTTATATGTGAAGGTTTAGGACTCGAATCTGGATTTTTCGGTGATGAACTTACCCAAGTGCAAGTAATGGCTTTGAATCATTACCCGCCTTGCCCAGACCCTAGCATAACCTTGGGATTACTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

72

Amino Acids

8.1

Weight (kDa)

4.89

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AgsI TTSAA 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AoxI GGCC 2 cut(s) 11, 79
Asp700I GAANNNNTTC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 143
BaeI ACNNNNGTAYC 2 cut(s) 22, 55
BccI CCATC 1 cut(s) 31
BfaI CTAG 2 cut(s) 27, 192
BsaJI CCNNGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 6
BshFI GGCC 2 cut(s) 13, 81
BsnI GGCC 2 cut(s) 13, 81
BspACI CCGC 1 cut(s) 176
BspANI GGCC 2 cut(s) 13, 81
BspCNI CTCAG 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 15, 72
BstMWI GCNNNNNNNGC 1 cut(s) 10
BsuRI GGCC 2 cut(s) 13, 81
CviJI RGCY 4 cut(s) 13, 71, 81, 161
CviKI_1 RGCY 4 cut(s) 13, 71, 81, 161
DdeI CTNAG 2 cut(s) 15, 72
Eco130I CCWWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaiI YATR 4 cut(s) 95, 97, 197, 217
FauI CCCGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 27, 192
HaeIII GGCC 2 cut(s) 13, 81
HinfI GANTC 3 cut(s) 111, 116, 166
HphI GGTGA 1 cut(s) 143
Hpy188III TCNNGA 2 cut(s) 27, 120
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 4, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 15, 72
LpnPI CCDG 3 cut(s) 27, 105, 198
MaeI CTAG 2 cut(s) 27, 192
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 3 cut(s) 29, 53, 58
MroXI GAANNNNTTC 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 116, 166
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
SchI GAGTC 1 cut(s) 105
SetI ASST 4 cut(s) 40, 73, 106, 203
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 176
SspMI CTAG 2 cut(s) 27, 192
StyI CCWWGG 1 cut(s) 201
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 5
TfiI GAWTC 2 cut(s) 116, 166
TspDTI ATGAA 1 cut(s) 150
XbaI TCTAGA 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 2 cut(s) 27, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.