Rh6DG306900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000429
Physical Location & Seq
Forward (+)
50736167 .. 50754106
17940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG306900.1

Sequence Viewer

Length: 831 bp
ATGTTTGACAAAATGTCTGAGAAGCTCATCTCAAACAGAAGTCACTTGCAATTTGTACCTGAATCCTACATATTACCCCCAGGAACTAGGCCAGGCAATACACAGGTCTCTGTATTGGAGGTCATTCCAGTCATTGATTTTCAGCTACTTGGTACCAACAGACCTCAGCTGATCAAGCAAATCATAGAGGCTTCCCAAAAATTTGGCTTCTTCCAGTTGATCAATCACGGGGTTGAAGACAATTTGCTGCATAAGGTATTGGACGTGGCCAACGAGTTCTTTGAGCAGCCTTATGAAGACAAGGCAAGCATGTATTCTGAAGATGTTGAGCAAAGTTGTAGACTATACACCAGCATTGATTATAACAAAGAGAAGGTGCATTTTTGGAGAGACAATTTGAGACACCCTTGTCATCCCTTAGAACAACACATCCATTTCTGGCCTCAGAAACCGCCTCAATATCGGGAGGTGGTTGGAAGTTATTCAGTGGAGGCAAGGAAGCTGAGTATATTGCTTTTGGATCTTATTGGAGAAGGGTTGGGACTTGAATCTGAATTTTTCGGAGATGAACTTACCGAAGTCCAACTGATGGGCATAAACTATTACCCACCTTGTCCAGACCCGAGCTTAACCTTAGGGTTACCAAAACATAGTGATGTTAACCTCATCACTCTTCTTCTCCAAGGAGAGGAAGTTCATGGTCTTCAGGTTTTAAAAGATGGGCAATGGTTGGCTGTTGAGCCTGTCCCTAATGCCTTTGTGGTTAATATAGGCCACACTTTACAGGTGCATCCACATCTTTATAACCCAGCCAGCTTCTCTTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

276

Amino Acids

31.63

Weight (kDa)

5.23

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 42 - 149 4.6e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 195 - 269 2.3e-22 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 363, 804
AasI GACNNNNNNGTC 1 cut(s) 408
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 589
AccI GTMKAC 1 cut(s) 340
AciI CCGC 1 cut(s) 452
AclWI GGATC 1 cut(s) 528
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 2 cut(s) 200, 554
AcuI CTGAAG 2 cut(s) 339, 689
AfaI GTAC 2 cut(s) 57, 154
AfiI CCNNNNNNNGG 2 cut(s) 589, 688
AgsI TTSAA 2 cut(s) 236, 548
AhdI GACNNNNNGTC 1 cut(s) 13
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 2 cut(s) 79, 91
AloI GAACNNNNNNTCC 4 cut(s) 414, 446, 678, 710
AluBI AGCT 6 cut(s) 25, 145, 169, 502, 627, 816
AluI AGCT 6 cut(s) 25, 145, 169, 502, 627, 816
Alw26I GTCTC 3 cut(s) 112, 384, 394
AlwI GGATC 1 cut(s) 528
Ama87I CYCGRG 1 cut(s) 622
AoxI GGCC 4 cut(s) 89, 267, 440, 772
ApeKI GCWGC 2 cut(s) 247, 286
ApoI RAATTY 2 cut(s) 200, 554
Asp700I GAANNNNTTC 1 cut(s) 481
Asp718I GGTACC 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 622
AxyI CCTNAGG 1 cut(s) 634
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 3 cut(s) 243, 303, 695
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 234, 298
BccI CCATC 2 cut(s) 583, 713
BciT130I CCWGG 2 cut(s) 81, 93
BclI TGATCA 2 cut(s) 171, 219
BcoDI GTCTC 3 cut(s) 112, 384, 394
BfaI CTAG 1 cut(s) 87
BisI GCNGC 2 cut(s) 248, 287
BlsI GCNGC 2 cut(s) 249, 288
Bme1390I CCNGG 2 cut(s) 81, 93
BmeRI GACNNNNNGTC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 622
BmgBI CACGTC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 81, 93
BmsI GCATC 1 cut(s) 799
BpiI GAAGAC 3 cut(s) 243, 303, 695
Bpu10I CCTNAGC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 79, 682
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 688
Bse1I ACTGG 2 cut(s) 128, 214
Bse21I CCTNAGG 1 cut(s) 634
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 2 cut(s) 81, 93
BseDI CCNNGG 2 cut(s) 79, 682
BseGI GGATG 3 cut(s) 412, 429, 790
BseLI CCNNNNNNNGG 2 cut(s) 589, 688
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 4 cut(s) 9, 179, 458, 494
BseNI ACTGG 2 cut(s) 128, 214
BseXI GCAGC 2 cut(s) 234, 298
BseYI CCCAGC 1 cut(s) 808
BshFI GGCC 4 cut(s) 91, 269, 442, 774
BshNI GGYRCC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 622
BslFI GGGAC 2 cut(s) 555, 731
BslI CCNNNNNNNGG 2 cut(s) 589, 688
BsmAI GTCTC 3 cut(s) 112, 384, 394
BsmFI GGGAC 2 cut(s) 555, 731
BsnI GGCC 4 cut(s) 91, 269, 442, 774
Bso31I GGTCTC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 622
Bsp143I GATC 3 cut(s) 171, 219, 520
BspACI CCGC 1 cut(s) 452
BspANI GGCC 4 cut(s) 91, 269, 442, 774
BspCNI CTCAG 4 cut(s) 10, 178, 457, 495
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 731
BsrI ACTGG 2 cut(s) 128, 214
BssECI CCNNGG 2 cut(s) 79, 682
BssMI GATC 3 cut(s) 171, 219, 520
BssT1I CCWWGG 1 cut(s) 682
Bst2UI CCWGG 2 cut(s) 81, 93
Bst6I CTCTTC 1 cut(s) 678
BstC8I GCNNGC 2 cut(s) 307, 814
BstDEI CTNAG 6 cut(s) 18, 165, 418, 444, 503, 634
BstEII GGTNACC 1 cut(s) 639
BstF5I GGATG 3 cut(s) 412, 429, 790
BstKTI GATC 3 cut(s) 174, 222, 523
BstMAI GTCTC 3 cut(s) 112, 384, 394
BstMBI GATC 3 cut(s) 171, 219, 520
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 2 cut(s) 81, 93
BstNSI RCATGY 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 639
BstSCI CCNGG 2 cut(s) 79, 91
BstV1I GCAGC 2 cut(s) 234, 298
BstV2I GAAGAC 3 cut(s) 243, 303, 695
BstX2I RGATCY 1 cut(s) 520
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 1 cut(s) 520
Bsu36I CCTNAGG 1 cut(s) 634
BsuRI GGCC 4 cut(s) 91, 269, 442, 774
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 412, 429, 790
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 307, 814
Csp6I GTAC 2 cut(s) 56, 153
CviAII CATG 2 cut(s) 310, 698
CviQI GTAC 2 cut(s) 56, 153
DdeI CTNAG 6 cut(s) 18, 165, 418, 444, 503, 634
DpnI GATC 3 cut(s) 173, 221, 522
DpnII GATC 3 cut(s) 171, 219, 520
DraI TTTAAA 1 cut(s) 714
DrdI GACNNNNNNGTC 1 cut(s) 408
DriI GACNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 678
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 682
Eco31I GGTCTC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 339, 689
Eco81I CCTNAGG 1 cut(s) 634
Eco88I CYCGRG 1 cut(s) 622
Eco91I GGTNACC 1 cut(s) 639
EcoO65I GGTNACC 1 cut(s) 639
EcoRII CCWGG 2 cut(s) 79, 91
EcoT14I CCWWGG 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 682
FaeI CATG 2 cut(s) 313, 701
FaqI GGGAC 2 cut(s) 555, 731
FatI CATG 2 cut(s) 309, 697
FbaI TGATCA 2 cut(s) 171, 219
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 248, 287
FokI GGATG 3 cut(s) 399, 416, 777
Fsp4HI GCNGC 2 cut(s) 248, 287
FspBI CTAG 1 cut(s) 87
GluI GCNGC 2 cut(s) 248, 287
GsaI CCCAGC 1 cut(s) 812
HaeIII GGCC 4 cut(s) 91, 269, 442, 774
Hin1II CATG 2 cut(s) 313, 701
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HinfI GANTC 2 cut(s) 62, 548
HpaI GTTAAC 1 cut(s) 661
Hpy166II GTNNAC 2 cut(s) 341, 661
Hpy188I TCNGA 5 cut(s) 19, 319, 447, 553, 563
Hpy188III TCNNGA 2 cut(s) 464, 617
Hpy8I GTNNAC 2 cut(s) 341, 661
HpyAV CCTTC 2 cut(s) 367, 527
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 4 cut(s) 49, 250, 379, 790
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 6 cut(s) 18, 165, 418, 444, 503, 634
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 313, 701
KpnI GGTACC 1 cut(s) 156
Ksp22I TGATCA 2 cut(s) 171, 219
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 3 cut(s) 171, 219, 520
Lsp1109I GCAGC 2 cut(s) 234, 298
LweI GCATC 1 cut(s) 799
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 41, 639
MalI GATC 3 cut(s) 173, 221, 522
MboI GATC 3 cut(s) 171, 219, 520
MboII GAAGA 7 cut(s) 202, 248, 308, 332, 665, 668, 695
MflI RGATCY 1 cut(s) 520
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 5 cut(s) 50, 200, 241, 394, 554
MluNI TGGCCA 1 cut(s) 269
MmeI TCCRAC 2 cut(s) 454, 607
MnlI CCTC 9 cut(s) 112, 174, 181, 453, 460, 465, 484, 674, 682
Mox20I TGGCCA 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 481
MscI TGGCCA 1 cut(s) 269
MseI TTAA 4 cut(s) 629, 660, 713, 765
MslI CAYNNNNRTG 1 cut(s) 654
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 81, 93
MvaI CCWGG 2 cut(s) 81, 93
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 3 cut(s) 171, 219, 520
NlaIII CATG 2 cut(s) 313, 701
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 62, 548
PflMI CCANNNNNTGG 1 cut(s) 589
PkrI GCNGC 2 cut(s) 249, 288
PsiI TTATAA 2 cut(s) 363, 804
Psp6I CCWGG 2 cut(s) 79, 91
PspEI GGTNACC 1 cut(s) 639
PspFI CCCAGC 1 cut(s) 808
PspGI CCWGG 2 cut(s) 79, 91
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 57, 154
RsaNI GTAC 2 cut(s) 56, 153
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 4 cut(s) 629, 660, 713, 765
SatI GCNGC 2 cut(s) 248, 287
Sau3AI GATC 3 cut(s) 171, 219, 520
ScrFI CCNGG 2 cut(s) 81, 93
SfaNI GCATC 1 cut(s) 799
SmiMI CAYNNNNRTG 1 cut(s) 654
Sse9I AATT 5 cut(s) 50, 200, 241, 394, 554
SsiI CCGC 1 cut(s) 452
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 79, 91
StyI CCWWGG 1 cut(s) 682
TaiI ACGT 1 cut(s) 267
TasI AATT 5 cut(s) 50, 200, 241, 394, 554
TfiI GAWTC 2 cut(s) 62, 548
Tru1I TTAA 4 cut(s) 629, 660, 713, 765
Tru9I TTAA 4 cut(s) 629, 660, 713, 765
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 247, 286
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 309, 582, 686
TspRI CASTG 1 cut(s) 492
Van91I CCANNNNNTGG 1 cut(s) 589
XapI RAATTY 2 cut(s) 200, 554
XceI RCATGY 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 481
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.