RLG00000004695

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000429
Physical Location & Seq
Reverse (-)
61497443 .. 61498444
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004695

Sequence Viewer

Length: 411 bp
ATGGAGAAGCTTGTTCCAAACTGGTACAGTGCTGCTCAACCCTTGCCTGAGACATACATATTCCCCCCTGATGCAAGACCAGGGAGTTTAGCATTGCTCCTTCAAGGTCCGACATTCCAAGAGCATGTTAGCAAATGTTTCATCGACGTGAAGGAAGTGGCTTTGAATATTTTGGAGTTGATCGGTGAAGGACTAGGGATAGGATCACAGTATTTCAGTGATGAACTTAGCAAAGAGACTGACATCTTTGTTAATCACTATCCACCTTGTCCAGACCCAAGTTTGACACTAGGAATAACTAAACACTCTGACCCACAGCTCATCACATCAAGGGGCTGTCAGTGGCCTTCGAGTTTTCGAGGATGGGGAATGGATTGGAGTGGAACCTATTTCAAATGGACTGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

137

Amino Acids

15.16

Weight (kDa)

4.86

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 211
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 3 cut(s) 104, 166, 394
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 2 cut(s) 10, 319
AluI AGCT 2 cut(s) 10, 319
Alw26I GTCTC 2 cut(s) 44, 230
AlwI GGATC 1 cut(s) 211
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 44, 230
BfaI CTAG 2 cut(s) 194, 290
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 107
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 26, 406
Bse3DI GCAATG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 26, 406
BseXI GCAGC 1 cut(s) 19
BshFI GGCC 1 cut(s) 346
BsmAI GTCTC 2 cut(s) 44, 230
BsnI GGCC 1 cut(s) 346
Bsp143I GATC 2 cut(s) 180, 203
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 385
BspPI GGATC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 92
BsrI ACTGG 2 cut(s) 26, 406
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 2 cut(s) 180, 203
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 29, 210
BstDEI CTNAG 2 cut(s) 48, 227
BstF5I GGATG 1 cut(s) 368
BstKTI GATC 2 cut(s) 183, 206
BstMAI GTCTC 2 cut(s) 44, 230
BstMBI GATC 2 cut(s) 180, 203
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 346
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 368
BtsIMutI CAGTG 3 cut(s) 34, 223, 347
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 125
CviJI RGCY 5 cut(s) 10, 161, 319, 336, 346
CviKI_1 RGCY 5 cut(s) 10, 161, 319, 336, 346
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 48, 227
DpnI GATC 2 cut(s) 182, 205
DpnII GATC 2 cut(s) 180, 203
Eco47I GGWCC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 128
FaiI YATR 3 cut(s) 55, 59, 126
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 194, 290
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 346
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 8
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 111, 310
Hpy188III TCNNGA 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 4 cut(s) 110, 145, 182, 357
HpyCH4III ACNGT 2 cut(s) 29, 210
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 48, 227
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 180, 203
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 7 cut(s) 7, 60, 66, 81, 93, 285, 387
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 194, 290
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 182, 205
MboI GATC 2 cut(s) 180, 203
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 1 cut(s) 353
MseI TTAA 2 cut(s) 252, 409
MslI CAYNNNNRTG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
NdeII GATC 2 cut(s) 180, 203
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 385
NspI RCATGY 1 cut(s) 128
PkrI GCNGC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 2 cut(s) 252, 409
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 180, 203
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 81
SetI ASST 6 cut(s) 12, 109, 150, 268, 321, 389
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 146
SspI AATATT 1 cut(s) 169
SspMI CTAG 2 cut(s) 194, 290
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 29, 210
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 144, 350, 358
Tru1I TTAA 2 cut(s) 252, 409
Tru9I TTAA 2 cut(s) 252, 409
TscAI CASTG 3 cut(s) 34, 223, 347
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 130, 237
TspRI CASTG 3 cut(s) 34, 223, 347
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 1 cut(s) 128
XspI CTAG 2 cut(s) 194, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.