Rh7CG097500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000429
Physical Location & Seq
Forward (+)
7350146 .. 7350517
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG097500.1

Sequence Viewer

Length: 372 bp
ATGTCAAATTATCGAGTAACTAGATATACAATCTGTAATTACAGCAATCTTTATTTATTTTATTTCAGAGAGCATGTTAGCAAATGTTTCATCGACGTGAAGGAAGTGGCTTTGAATATTTTGAAGCTGATCGGTGAAGGACTAGGGATAGGATCAGAGTATTTCAGTGATGAACTTAGCAAAGAGACAGACGTCTTTGTTAATAACTATCCACCTTGTCCAGGCCCAAGTTTGACACTAGGAACAACTAAACACTCTGACCCACAGCTCATCTCAATTTTACATCAAGGGGATGTCAGTGGCCTTCAAGTTTTCAAGGTGGGGAATGGATTGGACTGGAACCTATTTCAAATGGACTGGTGGTTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

5.19

Isoelectric Point (pI)

23.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 64 - 109 1.2e-11 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AclWI GGATC 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 5 cut(s) 115, 124, 308, 316, 350
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 127, 268
AluI AGCT 2 cut(s) 127, 268
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 160
AoxI GGCC 2 cut(s) 223, 301
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 3 cut(s) 21, 143, 239
Bme1390I CCNGG 1 cut(s) 222
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 222
BoxI GACNNNNGTC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 341, 362
BseBI CCWGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 221
BseNI ACTGG 2 cut(s) 341, 362
BshFI GGCC 2 cut(s) 225, 303
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 2 cut(s) 225, 303
Bsp143I GATC 2 cut(s) 129, 152
BspANI GGCC 2 cut(s) 225, 303
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 1 cut(s) 160
BsrI ACTGG 2 cut(s) 341, 362
BssMI GATC 2 cut(s) 129, 152
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 176
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 132, 155
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 129, 152
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 77
BstPAI GACNNNNGTC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 220
BsuRI GGCC 2 cut(s) 225, 303
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 172, 304
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 1 cut(s) 74
CviJI RGCY 5 cut(s) 110, 127, 225, 268, 303
CviKI_1 RGCY 5 cut(s) 110, 127, 225, 268, 303
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 131, 154
DpnII GATC 2 cut(s) 129, 152
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 77
FaiI YATR 3 cut(s) 27, 75, 370
FatI CATG 1 cut(s) 73
FokI GGATG 1 cut(s) 305
FspBI CTAG 3 cut(s) 21, 143, 239
HaeIII GGCC 2 cut(s) 225, 303
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 77
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HpaI GTTAAC 1 cut(s) 366
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 68, 157, 259
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 94, 131, 314
HpyCH4IV ACGT 2 cut(s) 96, 192
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 2 cut(s) 96, 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 77
KspAI GTTAAC 1 cut(s) 366
Kzo9I GATC 2 cut(s) 129, 152
LpnPI CCDG 4 cut(s) 207, 234, 322, 343
MaeI CTAG 3 cut(s) 21, 143, 239
MaeII ACGT 2 cut(s) 96, 192
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 131, 154
MboI GATC 2 cut(s) 129, 152
MluCI AATT 3 cut(s) 7, 37, 276
MseI TTAA 2 cut(s) 201, 365
MslI CAYNNNNRTG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
NdeII GATC 2 cut(s) 129, 152
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 341
NspI RCATGY 1 cut(s) 77
PshAI GACNNNNGTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 2 cut(s) 201, 365
Sau3AI GATC 2 cut(s) 129, 152
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 222
SetI ASST 7 cut(s) 99, 129, 195, 217, 270, 321, 345
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 3 cut(s) 7, 37, 276
SspI AATATT 1 cut(s) 118
SspMI CTAG 3 cut(s) 21, 143, 239
StyD4I CCNGG 1 cut(s) 220
TaiI ACGT 2 cut(s) 99, 195
TaqI TCGA 2 cut(s) 13, 93
TasI AATT 3 cut(s) 7, 37, 276
Tru1I TTAA 2 cut(s) 201, 365
Tru9I TTAA 2 cut(s) 201, 365
TscAI CASTG 2 cut(s) 172, 304
TspDTI ATGAA 2 cut(s) 79, 186
TspRI CASTG 2 cut(s) 172, 304
XagI CCTNNNNNAGG 1 cut(s) 219
XceI RCATGY 1 cut(s) 77
XspI CTAG 3 cut(s) 21, 143, 239
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.