RLG00000012402

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000429
Physical Location & Seq
Reverse (-)
18381426 .. 18382204
779 bp
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UTR
Exon/CDS
Intron
RLM00000012402

Sequence Viewer

Length: 378 bp
ATGGAGAAGCTCATCTCGAATAGAAGTGACTTGCAATCTGTGCAGGACTCTTACATATTACCTCCCGGAACTAGACCTGGGAATAAACAATTGAGTTTCTACAAGTTGGCTAATCACAGAGTTCCACACAACTTGCTGCATAATATAATGAATGTTATTAAGGAGTTCTTTGAGCTACCTTGTGAAGACAAAGCAAGCATCTATTCTGAAGATGCCAAGAAAAATCGAACTAGGCCATGGCAATACACAGGTGCAGTGTCTGTATTGGACGTCATTCCAGTCATTGATTTTCAGCAACTTGGTACCAACAGACCTCAGCTGACCAATCAAATCATAGAGGCTTCCCAACAATTCGGCTTCTTCCAGATATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

126

Amino Acids

14.44

Weight (kDa)

6.83

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 31 - 74 7e-08 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 1 cut(s) 304
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 3 cut(s) 10, 175, 319
AluI AGCT 3 cut(s) 10, 175, 319
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 136
Asp718I GGTACC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 66
BanI GGYRCC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 66
BfaI CTAG 2 cut(s) 72, 231
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 2 cut(s) 66, 78
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 66, 78
BmsI GCATC 2 cut(s) 202, 207
BpiI GAAGAC 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 77, 236
Bse1I ACTGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 77, 236
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 123
BsgI GTGCAG 2 cut(s) 62, 273
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 66
BsnI GGCC 1 cut(s) 235
Bsp19I CCATGG 1 cut(s) 236
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 302
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 77, 236
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 64, 76
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 260
Csp6I GTAC 1 cut(s) 303
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 1 cut(s) 237
CviJI RGCY 7 cut(s) 10, 110, 175, 235, 319, 341, 357
CviKI_1 RGCY 7 cut(s) 10, 110, 175, 235, 319, 341, 357
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 1 cut(s) 240
FaiI YATR 5 cut(s) 56, 141, 146, 238, 335
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 2 cut(s) 72, 231
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 1 cut(s) 240
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 16, 364
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 34, 43, 139, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 1 cut(s) 240
KpnI GGTACC 1 cut(s) 306
LpnPI CCDG 6 cut(s) 29, 63, 79, 90, 234, 291
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 2 cut(s) 202, 207
MaeI CTAG 2 cut(s) 72, 231
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 26
MboII GAAGA 3 cut(s) 197, 221, 352
MfeI CAATTG 1 cut(s) 89
MluCI AATT 2 cut(s) 89, 350
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 72, 324, 331
MseI TTAA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 66, 78
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 236
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 137
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 66, 78
SetI ASST 9 cut(s) 12, 64, 79, 177, 181, 253, 273, 316, 321
SfaNI GCATC 2 cut(s) 202, 207
Sse9I AATT 2 cut(s) 89, 350
SspMI CTAG 2 cut(s) 72, 231
StyD4I CCNGG 2 cut(s) 64, 76
StyI CCWWGG 1 cut(s) 236
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 17, 226
TasI AATT 2 cut(s) 89, 350
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 261
XspI CTAG 2 cut(s) 72, 231
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.