RLG00000012396

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000429
Physical Location & Seq
Reverse (-)
18314314 .. 18315430
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012396

Sequence Viewer

Length: 822 bp
ATGGCCAACGAGTTCTTTGAGCAGCCTTATGAAGACAAGGCAAGCATGTATTCTGAAGATGTTGAGCAAAGTTGTAGACTATACACCAGCATTGATTATAACAAAGAGAAGGTGCACTTTTGGAGAGACAATTTGAGACACCCTTGTCATCCTTTAGAGCAACACATCCATTTCTGGCCTCGGAAACCGCCTCAATATCGGGAGGTGGTTGGAAGTTATTCAGTGGAGGCAAGGAATCTGAGTATATTGCTTTTGGATCTTATTGGAGAAGGGTTGGGACTTGAATCTGGATTTTTCGGAGATGATCTTACCGAAGTCCAACTGATGGGCATAAACTATTACCCACCTTGTCCAGACCCGAGCTTAACCTTAGGGTTACCAAAACATAGTGATGTTAACCTCATCACTCTTCTTCTCCAAGCAGAGGAAGTTCATGGTCTTCAGGTTTTGAAAGATGGGCAATGGTTGGCTGTTGAGCCTGTCCCTAATGCCTTTGTGGTTAATATAGGCCACACTTTACAGGTGCATCCACATCTTTACCTAGCCAGCTCCTCTTTCTTTCAGCATAATGGGAAGCTAGGCAGCGCCGAGCACAGAGTCATGACAAATGAAAAGGTTTCCCATACGACAGTGGGTAGCTTCATCCATCCTTCCAGCAATTACCCTGTTGAGCCTGCAAAAGCTCTACTAGATAGGGACTGCAGTAGCTCTCCACTCTTTAGAGCTTTCGTGTACAAGGACTTTGTTAGCACCTACGTAACAAACACTCATGAGGGAGTACCACCCCTTGAGCCTCACAAGATCCAGCCACGAAGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

274

Amino Acids

31.0

Weight (kDa)

5.68

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 107 - 217 1.8e-25 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AasI GACNNNNNNGTC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 325
AccI GTMKAC 1 cut(s) 76
AciI CCGC 1 cut(s) 188
AclWI GGATC 2 cut(s) 264, 796
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 75, 425
AfaI GTAC 2 cut(s) 734, 780
AfiI CCNNNNNNNGG 2 cut(s) 325, 424
AgsI TTSAA 2 cut(s) 284, 451
AluBI AGCT 7 cut(s) 363, 549, 577, 639, 683, 708, 725
AluI AGCT 7 cut(s) 363, 549, 577, 639, 683, 708, 725
Alw21I GWGCWC 2 cut(s) 117, 594
Alw26I GTCTC 2 cut(s) 120, 130
Alw44I GTGCAC 1 cut(s) 113
AlwI GGATC 2 cut(s) 264, 796
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 3 cut(s) 3, 176, 508
ApaLI GTGCAC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 22, 582
Asp700I GAANNNNTTC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 39, 431
Bbv12I GWGCWC 2 cut(s) 117, 594
BbvI GCAGC 2 cut(s) 34, 594
BccI CCATC 3 cut(s) 319, 449, 654
BcoDI GTCTC 2 cut(s) 120, 130
BfaI CTAG 3 cut(s) 542, 578, 689
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 1 cut(s) 588
BisI GCNGC 2 cut(s) 23, 583
BlsI GCNGC 2 cut(s) 24, 584
BmeT110I CYCGRG 1 cut(s) 358
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 2 cut(s) 39, 431
BpuEI CTTGAG 1 cut(s) 809
BsaAI YACGTR 1 cut(s) 757
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 424
Bse21I CCTNAGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 5 cut(s) 148, 165, 526, 642, 646
BseLI CCNNNNNNNGG 2 cut(s) 325, 424
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 541
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 2 cut(s) 34, 594
BshFI GGCC 3 cut(s) 5, 178, 510
BsiHKAI GWGCWC 2 cut(s) 117, 594
BsiHKCI CYCGRG 1 cut(s) 358
BslFI GGGAC 3 cut(s) 291, 467, 710
BslI CCNNNNNNNGG 2 cut(s) 325, 424
BsmAI GTCTC 2 cut(s) 120, 130
BsmFI GGGAC 3 cut(s) 291, 467, 710
BsnI GGCC 3 cut(s) 5, 178, 510
BsoBI CYCGRG 1 cut(s) 358
Bsp1286I GDGCHC 2 cut(s) 117, 594
Bsp1407I TGTACA 1 cut(s) 732
Bsp143I GATC 3 cut(s) 256, 304, 801
BspACI CCGC 1 cut(s) 188
BspANI GGCC 3 cut(s) 5, 178, 510
BspCNI CTCAG 1 cut(s) 231
BspHI TCATGA 2 cut(s) 600, 769
BspMAI CTGCAG 1 cut(s) 704
BspPI GGATC 2 cut(s) 264, 796
BsrDI GCAATG 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 732
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 3 cut(s) 256, 304, 801
Bst4CI ACNGT 1 cut(s) 631
Bst6I CTCTTC 1 cut(s) 414
BstAUI TGTACA 1 cut(s) 732
BstBAI YACGTR 1 cut(s) 757
BstC8I GCNNGC 3 cut(s) 43, 547, 675
BstDEI CTNAG 2 cut(s) 239, 370
BstEII GGTNACC 1 cut(s) 375
BstF5I GGATG 5 cut(s) 148, 165, 526, 642, 646
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 3 cut(s) 259, 307, 804
BstMAI GTCTC 2 cut(s) 120, 130
BstMBI GATC 3 cut(s) 256, 304, 801
BstNSI RCATGY 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 700
BstSLI GKGCMC 1 cut(s) 117
BstSNI TACGTA 1 cut(s) 757
BstV1I GCAGC 2 cut(s) 34, 594
BstV2I GAAGAC 2 cut(s) 39, 431
BstX2I RGATCY 2 cut(s) 256, 801
BstYI RGATCY 2 cut(s) 256, 801
Bsu36I CCTNAGG 1 cut(s) 370
BsuRI GGCC 3 cut(s) 5, 178, 510
BtsCI GGATG 5 cut(s) 148, 165, 526, 642, 646
BtsIMutI CAGTG 2 cut(s) 228, 636
Cac8I GCNNGC 3 cut(s) 43, 547, 675
CciI TCATGA 2 cut(s) 600, 769
CfoI GCGC 1 cut(s) 587
Csp6I GTAC 2 cut(s) 733, 779
CviAII CATG 4 cut(s) 46, 434, 601, 770
CviQI GTAC 2 cut(s) 733, 779
DdeI CTNAG 2 cut(s) 239, 370
DpnI GATC 3 cut(s) 258, 306, 803
DpnII GATC 3 cut(s) 256, 304, 801
DrdI GACNNNNNNGTC 1 cut(s) 144
DseDI GACNNNNNNGTC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco105I TACGTA 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 75, 425
Eco81I CCTNAGG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 358
Eco91I GGTNACC 1 cut(s) 375
EcoO65I GGTNACC 1 cut(s) 375
FaeI CATG 4 cut(s) 49, 437, 604, 773
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 3 cut(s) 291, 467, 710
FatI CATG 4 cut(s) 45, 433, 600, 769
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 23, 583
FokI GGATG 5 cut(s) 135, 152, 513, 629, 633
Fsp4HI GCNGC 2 cut(s) 23, 583
FspBI CTAG 3 cut(s) 542, 578, 689
GlaI GCGC 1 cut(s) 586
GluI GCNGC 2 cut(s) 23, 583
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 3 cut(s) 5, 178, 510
HhaI GCGC 1 cut(s) 587
Hin1II CATG 4 cut(s) 49, 437, 604, 773
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 3 cut(s) 235, 284, 597
HpaI GTTAAC 1 cut(s) 397
Hpy166II GTNNAC 4 cut(s) 77, 115, 397, 733
Hpy188I TCNGA 4 cut(s) 55, 183, 240, 299
Hpy188III TCNNGA 5 cut(s) 200, 288, 353, 601, 770
Hpy8I GTNNAC 4 cut(s) 77, 115, 397, 733
HpyAV CCTTC 3 cut(s) 103, 263, 660
HpyCH4III ACNGT 1 cut(s) 631
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 4 cut(s) 115, 526, 677, 702
HpyF3I CTNAG 2 cut(s) 239, 370
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 4 cut(s) 49, 437, 604, 773
HspAI GCGC 1 cut(s) 585
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 3 cut(s) 256, 304, 801
LmnI GCTCC 1 cut(s) 554
Lsp1109I GCAGC 2 cut(s) 34, 594
LweI GCATC 1 cut(s) 535
MaeI CTAG 3 cut(s) 542, 578, 689
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 2 cut(s) 375, 757
MalI GATC 3 cut(s) 258, 306, 803
MboI GATC 3 cut(s) 256, 304, 801
MboII GAAGA 5 cut(s) 44, 68, 401, 404, 431
MflI RGATCY 2 cut(s) 256, 801
MhlI GDGCHC 2 cut(s) 117, 594
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 130, 658
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 606
MmeI TCCRAC 2 cut(s) 190, 343
MnlI CCTC 9 cut(s) 189, 196, 201, 220, 410, 418, 562, 766, 804
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 217
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 365, 396, 501
MslI CAYNNNNRTG 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 5
NdeII GATC 3 cut(s) 256, 304, 801
NlaIII CATG 4 cut(s) 49, 437, 604, 773
NmeAIII GCCGAG 1 cut(s) 613
NspI RCATGY 1 cut(s) 49
PagI TCATGA 2 cut(s) 600, 769
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 235, 284
PflMI CCANNNNNTGG 1 cut(s) 325
PkrI GCNGC 2 cut(s) 24, 584
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
Ppu21I YACGTR 1 cut(s) 757
PsiI TTATAA 1 cut(s) 99
PspEI GGTNACC 1 cut(s) 375
PstI CTGCAG 1 cut(s) 704
PsuI RGATCY 2 cut(s) 256, 801
RsaI GTAC 2 cut(s) 734, 780
RsaNI GTAC 2 cut(s) 733, 779
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 3 cut(s) 365, 396, 501
SatI GCNGC 2 cut(s) 23, 583
Sau3AI GATC 3 cut(s) 256, 304, 801
SchI GAGTC 1 cut(s) 606
SduI GDGCHC 2 cut(s) 117, 594
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 1 cut(s) 700
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
SnaBI TACGTA 1 cut(s) 757
Sse9I AATT 2 cut(s) 130, 658
SsiI CCGC 1 cut(s) 188
SspMI CTAG 3 cut(s) 542, 578, 689
TaaI ACNGT 1 cut(s) 631
TaiI ACGT 1 cut(s) 759
TasI AATT 2 cut(s) 130, 658
TatI WGTACW 1 cut(s) 732
TfiI GAWTC 2 cut(s) 235, 284
Tru1I TTAA 3 cut(s) 365, 396, 501
Tru9I TTAA 3 cut(s) 365, 396, 501
TscAI CASTG 2 cut(s) 228, 636
TseI GCWGC 2 cut(s) 22, 582
TspDTI ATGAA 4 cut(s) 45, 422, 624, 631
TspRI CASTG 2 cut(s) 228, 636
Van91I CCANNNNNTGG 1 cut(s) 325
VneI GTGCAC 1 cut(s) 113
XceI RCATGY 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 3 cut(s) 542, 578, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.