Rroxscaffold_7G00180010

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000429
Physical Location & Seq
Reverse (-)
19561900 .. 19562344
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180010.1

Sequence Viewer

Length: 297 bp
ATGTTAACTTCATCACTCTTCTTCTCGATCCAAGGTGAAGAAGTTCATGGTCTTCAGGTCTTGAAAGATGGGCAATGGTTGGCTGGCGAGCCTGTCCCTAATGCCTTTGTGGTTAATATAGGCCACATGTTACAGATTATCAGTAACGGGAAGCTAAGCAGTGCCGAGCACAGAGTTATGACCAACAAAAAGGTGTCGAGGGCAATGGTAACCAGCTTCATCCATCCTTCCAGCGACTGCCTTATTGAGGCTGCAAAAGCAATAGTATCTAAGGACTGTAGCAGCCCTCCACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

98

Amino Acids

10.58

Weight (kDa)

6.89

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 5 - 76 1.4e-19 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 2 cut(s) 154, 216
AluI AGCT 2 cut(s) 154, 216
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 237
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 251, 282
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 62, 231
BfmI CTRYAG 2 cut(s) 277, 293
BisI GCNGC 2 cut(s) 252, 283
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 2 cut(s) 253, 284
BpiI GAAGAC 1 cut(s) 44
Bpu1102I GCTNAGC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse3DI GCAATG 2 cut(s) 80, 210
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 219, 223
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 2 cut(s) 80, 210
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 171
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 22
BsrDI GCAATG 2 cut(s) 80, 210
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 85, 89
BstDEI CTNAG 2 cut(s) 155, 270
BstEII GGTNACC 1 cut(s) 208
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 219, 223
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 130
BstPI GGTNACC 1 cut(s) 208
BstSFI CTRYAG 2 cut(s) 277, 293
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 2 cut(s) 219, 223
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 85, 89
CaiI CAGNNNCTG 1 cut(s) 237
CviAII CATG 2 cut(s) 47, 127
CviJI RGCY 7 cut(s) 83, 91, 123, 154, 216, 251, 285
CviKI_1 RGCY 7 cut(s) 83, 91, 123, 154, 216, 251, 285
DdeI CTNAG 2 cut(s) 155, 270
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO65I GGTNACC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 50, 130
FaiI YATR 5 cut(s) 48, 119, 128, 179, 295
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 46, 126
Fnu4HI GCNGC 2 cut(s) 252, 283
FokI GGATG 2 cut(s) 206, 210
Fsp4HI GCNGC 2 cut(s) 252, 283
GluI GCNGC 2 cut(s) 252, 283
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 2 cut(s) 50, 130
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaI GTTAAC 1 cut(s) 6
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 2 cut(s) 25, 61
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 2 cut(s) 155, 270
Hsp92II CATG 2 cut(s) 50, 130
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 27
LpnPI CCDG 5 cut(s) 41, 69, 105, 226, 244
Lsp1109I GCAGC 1 cut(s) 238
MaeIII GTNAC 3 cut(s) 129, 143, 208
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 4 cut(s) 10, 13, 44, 50
MhlI GDGCHC 1 cut(s) 171
MnlI CCTC 3 cut(s) 192, 241, 297
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 5, 114
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 1 cut(s) 27
NlaIII CATG 2 cut(s) 50, 130
NmeAIII GCCGAG 1 cut(s) 190
NspI RCATGY 1 cut(s) 130
PciI ACATGT 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 253, 284
PscI ACATGT 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 237
SaqAI TTAA 2 cut(s) 5, 114
SatI GCNGC 2 cut(s) 252, 283
Sau3AI GATC 1 cut(s) 27
SduI GDGCHC 1 cut(s) 171
SetI ASST 5 cut(s) 37, 60, 156, 195, 218
SfcI CTRYAG 2 cut(s) 277, 293
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 26, 197
Tru1I TTAA 2 cut(s) 5, 114
Tru9I TTAA 2 cut(s) 5, 114
TscAI CASTG 1 cut(s) 166
TseI GCWGC 2 cut(s) 251, 282
TspDTI ATGAA 2 cut(s) 35, 208
TspRI CASTG 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 245
XceI RCATGY 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.