Rroxscaffold_7G00180030

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000429
Physical Location & Seq
Reverse (-)
19567438 .. 19580421
12984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180030.1

Sequence Viewer

Length: 861 bp
ATGGCCGCTCAAGAATTTGGATTTTTCCAGGTATTGAATGTAGCCAGTGAGTTCTTTGAGCTGCCTAGTGACGACAAAGCAAGTGTCTATTCCGAAAATTCTATGCAAGGCTGTAGATTATACACCAGCATCGACTATATGAGAGAACAGAGAGACGTTTTGCGACACCCTTGTCATCCTTTAGAGGAGCACATCCGATTCTGGCCACAGAAACCACCTCAATATCGATTGAGTCTTGGAGTCTTTGATAAACGTTTTGATATTTCCAAAACAGGCATCAGCATTTATAATAACTTATCTTATCCAAGCTTAATCTTGGGATTACCTAAACATAGTGATGTCAACCTCATCACTCTTCTTATACAAGGAGAAGTTTCTGGACTTCAGGTTTTGAAAGATGGGCAATGGTTAACTGTTCAGCCTGTCCCTCATGCATTTGTAGTTAATATAGGCCACATCTTACAGATTATCAGCAATGGGAAGCTATGCAGTGCCGAGCACAGAGTTGTGACAAACAAAAAGGCTTCAAGGACGACAGTCGCCAGCTACATCAATCCATTCAACAACTACCAAATTGAACCTGCAAAAGCACTACTAGTTAAGTACTTCAGTCCTCCACTCTACAGAGCTTTTGCATACAAGGATTTTCTTAGCACCCATGTAACAGATACTCATCAAGAAATTTATACATGGGGTCACTTGAGAGTTAGAGTTCGTTTCACGAATCAAGTCTCTGAAATTGTACTAATGCTCCAGGAAGAGGCATTTGCACTAAACAATCTGATCAAGTTTCAATATCTGAAAAACCATAATTTGGACCTCCTGATCGAAAGACAAAATCATAAAATATCAGGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

286

Amino Acids

32.99

Weight (kDa)

8.63

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 101 - 186 1.1e-25 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AasI GACNNNNNNGTC 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 814
AccBSI CCGCTC 1 cut(s) 8
AciI CCGC 1 cut(s) 6
AclI AACGTT 1 cut(s) 253
AcoI YGGCCR 2 cut(s) 3, 203
AcsI RAATTY 3 cut(s) 14, 97, 681
AcuI CTGAAG 2 cut(s) 368, 592
AfaI GTAC 2 cut(s) 605, 744
AfiI CCNNNNNNNGG 2 cut(s) 760, 814
AgsI TTSAA 6 cut(s) 37, 394, 528, 562, 578, 794
AhlI ACTAGT 1 cut(s) 595
AjnI CCWGG 2 cut(s) 27, 753
AluBI AGCT 5 cut(s) 61, 309, 484, 546, 629
AluI AGCT 5 cut(s) 61, 309, 484, 546, 629
Alw21I GWGCWC 2 cut(s) 192, 501
Alw26I GTCTC 2 cut(s) 147, 736
AoxI GGCC 4 cut(s) 3, 203, 451, 854
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 3 cut(s) 14, 97, 681
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspS9I GGNCC 2 cut(s) 817, 854
AvaII GGWCC 1 cut(s) 817
BalI TGGCCA 1 cut(s) 205
Bbv12I GWGCWC 2 cut(s) 192, 501
BbvI GCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 392
BciT130I CCWGG 2 cut(s) 29, 755
BclI TGATCA 1 cut(s) 783
BcoDI GTCTC 2 cut(s) 147, 736
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 2 cut(s) 66, 596
BfmI CTRYAG 2 cut(s) 112, 622
BfuAI ACCTGC 1 cut(s) 589
BisI GCNGC 2 cut(s) 6, 62
BlsI GCNGC 2 cut(s) 7, 63
BmcAI AGTACT 1 cut(s) 605
Bme1390I CCNGG 2 cut(s) 29, 755
Bme18I GGWCC 1 cut(s) 817
BmgT120I GGNCC 2 cut(s) 817, 854
BmrFI CCNGG 2 cut(s) 29, 755
BmsI GCATC 2 cut(s) 138, 285
BoxI GACNNNNGTC 1 cut(s) 536
BpmI CTGGAG 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 721
Bsa29I ATCGAT 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 672
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 2 cut(s) 760, 814
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 2 cut(s) 410, 481
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 2 cut(s) 29, 755
BseCI ATCGAT 1 cut(s) 226
BseGI GGATG 2 cut(s) 175, 192
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 760, 814
BseMI GCAATG 2 cut(s) 410, 481
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 4 cut(s) 5, 205, 453, 856
BshVI ATCGAT 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 192, 501
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 760, 814
BsmAI GTCTC 2 cut(s) 147, 736
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 4 cut(s) 5, 205, 453, 856
Bsp1286I GDGCHC 2 cut(s) 192, 501
Bsp143I GATC 2 cut(s) 783, 825
BspACI CCGC 1 cut(s) 6
BspANI GGCC 4 cut(s) 5, 205, 453, 856
BspDI ATCGAT 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 410, 481
BsrI ACTGG 1 cut(s) 45
BssMI GATC 2 cut(s) 783, 825
Bst2UI CCWGG 2 cut(s) 29, 755
Bst4CI ACNGT 2 cut(s) 415, 538
Bst6I CTCTTC 2 cut(s) 360, 753
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 1 cut(s) 650
BstF5I GGATG 2 cut(s) 175, 192
BstKTI GATC 2 cut(s) 786, 828
BstMAI GTCTC 2 cut(s) 147, 736
BstMBI GATC 2 cut(s) 783, 825
BstNI CCWGG 2 cut(s) 29, 755
BstPAI GACNNNNGTC 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 27, 753
BstSFI CTRYAG 2 cut(s) 112, 622
BstV1I GCAGC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 226
BsuRI GGCC 4 cut(s) 5, 205, 453, 856
BsuTUI ATCGAT 1 cut(s) 226
BtsCI GGATG 2 cut(s) 175, 192
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 52, 496
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 817, 854
ClaI ATCGAT 1 cut(s) 226
Csp6I GTAC 2 cut(s) 604, 743
CviAII CATG 3 cut(s) 431, 659, 690
CviQI GTAC 2 cut(s) 604, 743
DdeI CTNAG 1 cut(s) 650
DpnI GATC 2 cut(s) 785, 827
DpnII GATC 2 cut(s) 783, 825
DrdI GACNNNNNNGTC 1 cut(s) 171
DseDI GACNNNNNNGTC 1 cut(s) 171
EaeI YGGCCR 2 cut(s) 3, 203
Eam1104I CTCTTC 2 cut(s) 360, 753
EarI CTCTTC 2 cut(s) 360, 753
Eco47I GGWCC 1 cut(s) 817
Eco57I CTGAAG 2 cut(s) 368, 592
EcoO109I RGGNCCY 1 cut(s) 854
EcoRII CCWGG 2 cut(s) 27, 753
EcoT22I ATGCAT 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 3 cut(s) 434, 662, 693
FaqI GGGAC 1 cut(s) 410
FatI CATG 3 cut(s) 430, 658, 689
FbaI TGATCA 1 cut(s) 783
Fnu4HI GCNGC 2 cut(s) 6, 62
FokI GGATG 2 cut(s) 162, 179
Fsp4HI GCNGC 2 cut(s) 6, 62
FspBI CTAG 2 cut(s) 66, 596
GluI GCNGC 2 cut(s) 6, 62
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 4 cut(s) 5, 205, 453, 856
Hin1II CATG 3 cut(s) 434, 662, 693
HincII GTYRAC 2 cut(s) 343, 411
HindII GTYRAC 2 cut(s) 343, 411
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 4 cut(s) 198, 232, 240, 724
HpaI GTTAAC 1 cut(s) 411
Hpy166II GTNNAC 2 cut(s) 343, 411
Hpy188I TCNGA 5 cut(s) 94, 197, 736, 783, 801
Hpy188III TCNNGA 5 cut(s) 11, 378, 677, 721, 823
Hpy8I GTNNAC 2 cut(s) 343, 411
HpyCH4III ACNGT 2 cut(s) 415, 538
HpyCH4IV ACGT 2 cut(s) 156, 253
HpyCH4V TGCA 6 cut(s) 106, 434, 489, 584, 635, 770
HpyF3I CTNAG 1 cut(s) 650
HpySE526I ACGT 2 cut(s) 156, 253
Hsp92II CATG 3 cut(s) 434, 662, 693
Ksp22I TGATCA 1 cut(s) 783
KspAI GTTAAC 1 cut(s) 411
Kzo9I GATC 2 cut(s) 783, 825
LmnI GCTCC 2 cut(s) 187, 756
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 2 cut(s) 138, 285
MaeI CTAG 2 cut(s) 66, 596
MaeII ACGT 2 cut(s) 156, 253
MaeIII GTNAC 4 cut(s) 68, 508, 661, 695
MalI GATC 2 cut(s) 785, 827
MbiI CCGCTC 1 cut(s) 8
MboI GATC 2 cut(s) 783, 825
MboII GAAGA 2 cut(s) 347, 770
MhlI GDGCHC 2 cut(s) 192, 501
MlsI TGGCCA 1 cut(s) 205
MluCI AATT 6 cut(s) 14, 97, 573, 681, 738, 811
MluNI TGGCCA 1 cut(s) 205
MlyI GAGTC 2 cut(s) 241, 249
MnlI CCTC 7 cut(s) 178, 228, 356, 438, 624, 754, 830
Mox20I TGGCCA 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 436
MscI TGGCCA 1 cut(s) 205
MseI TTAA 5 cut(s) 311, 410, 444, 600, 859
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 29, 755
MvaI CCWGG 2 cut(s) 29, 755
NdeII GATC 2 cut(s) 783, 825
NlaIII CATG 3 cut(s) 434, 662, 693
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 3 cut(s) 68, 508, 695
NsiI ATGCAT 1 cut(s) 436
PfeI GAWTC 2 cut(s) 198, 724
PflMI CCANNNNNTGG 1 cut(s) 814
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 2 cut(s) 7, 63
PleI GAGTC 2 cut(s) 240, 248
PpsI GAGTC 2 cut(s) 240, 248
PshAI GACNNNNGTC 1 cut(s) 536
PsiI TTATAA 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 27, 753
PspGI CCWGG 2 cut(s) 27, 753
PspPI GGNCC 2 cut(s) 817, 854
RsaI GTAC 2 cut(s) 605, 744
RsaNI GTAC 2 cut(s) 604, 743
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 5 cut(s) 311, 410, 444, 600, 859
SatI GCNGC 2 cut(s) 6, 62
Sau3AI GATC 2 cut(s) 783, 825
Sau96I GGNCC 2 cut(s) 817, 854
ScaI AGTACT 1 cut(s) 605
SchI GAGTC 2 cut(s) 241, 249
ScrFI CCNGG 2 cut(s) 29, 755
SduI GDGCHC 2 cut(s) 192, 501
SfaNI GCATC 2 cut(s) 138, 285
SfcI CTRYAG 2 cut(s) 112, 622
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 9, 700
SmoI CTYRAG 2 cut(s) 9, 700
SpeI ACTAGT 1 cut(s) 595
Sse9I AATT 6 cut(s) 14, 97, 573, 681, 738, 811
SsiI CCGC 1 cut(s) 6
SspMI CTAG 2 cut(s) 66, 596
StyD4I CCNGG 2 cut(s) 27, 753
TaaI ACNGT 2 cut(s) 415, 538
TaiI ACGT 2 cut(s) 159, 256
TaqI TCGA 3 cut(s) 132, 226, 828
TasI AATT 6 cut(s) 14, 97, 573, 681, 738, 811
TatI WGTACW 2 cut(s) 603, 742
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 198, 724
Tru1I TTAA 5 cut(s) 311, 410, 444, 600, 859
Tru9I TTAA 5 cut(s) 311, 410, 444, 600, 859
TscAI CASTG 2 cut(s) 52, 496
TseFI GTSAC 3 cut(s) 68, 508, 695
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 3 cut(s) 68, 508, 695
TspRI CASTG 2 cut(s) 52, 496
Van91I CCANNNNNTGG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 817
XapI RAATTY 3 cut(s) 14, 97, 681
XspI CTAG 2 cut(s) 66, 596
ZrmI AGTACT 1 cut(s) 605
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.