FvH4_2g21774

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000429
Physical Location & Seq
Forward (+)
18024067 .. 18025443
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21774.t1

Sequence Viewer

Length: 1029 bp
ATGGCTACCAAGCTCATCTCAAACCAGCATGACTTCAAAGTTGTACCTGAATCCTACATATTACCCCCAGGGGTTAGACCAGGCACTACCGATGCGTCTGTAATGGAGGTCATTCCAGTCATTGATTTGCAGCATCTTGCTACCAACAGATCTCAGGTGGTCAAGCAAATCATAGAGGCTTCTCAAGAATACGGCTTCTTCCAGTTGATCAATCATGGGGTTGGAGACGATGTGCTGCGTAAGGTATTGAAGGTGGCTAATGAGTTCTTTGAGCTGCCTAGTGAAGATAAAGCAGTTATGTATTCTGAAGATTCTAAGCAAAAATCTAGAGTTTACACCAGCATTGACTATGACAATGAGAAGGTGCATTTCTGGAGAGACTCTTTGAGACACCCTTGCCATCCACTAGCGGAACACATCGATTCCTGGCCTCAGAAACCGCCTCAATATCGGGAGGTAATGGGAGGTTATGCAGTGGAAGCGAGGAAGCTTTGTATGTTGCTTTTGGATCTGATTGGTGAAGGCTTGGGACTTGAACCCGGATATTTCCGGGATGAACTTACCGAAGTGCAACTCATGGCTGCCAATTATTACCCAGCTTGCCCAGACCCAAGCTTAACCTTGGGATTACCTAAACATAGTGATATTAACCTCATCACTCTTCTTCTCCAAGGGGAAGAAGTTCATGGTCTTCAGGTCTTGAAAGATGGACAATGGTTGGGTGTTGAGCCTCAACCTGATGGCTTTGTGGTTAACATAGGCCATATGCTAAAGATTGTCAGTAACGGGAAGCTAAGCAGTGCCGAGCACAGAGTTATGACCAACAAAAAGGTGTCGCGCACAACAGTAACCCACTTCATCCATCCTGCCGGCAACTGCTTTATTGAGCCTGCAAAAGCACTAGCATCTAAGGACTCCGGCAGCCCTCCACTGTTTAAATCATTTGCATACAAGGACTTTCTTCCCAGCTATGTACAAGACACTCATGCGGGAGTACCACCCCTCGATCGTCATAAGATCCAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

343

Amino Acids

38.28

Weight (kDa)

6.0

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 38 - 145 2.8e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 191 - 289 1.4e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 838
AciI CCGC 3 cut(s) 410, 440, 989
AclWI GGATC 2 cut(s) 516, 1012
AcuI CTGAAG 2 cut(s) 327, 677
AfaI GTAC 3 cut(s) 45, 975, 996
AgsI TTSAA 4 cut(s) 37, 250, 536, 703
AjnI CCWGG 4 cut(s) 67, 79, 425, 1020
AluBI AGCT 7 cut(s) 13, 274, 490, 599, 615, 793, 969
AluI AGCT 7 cut(s) 13, 274, 490, 599, 615, 793, 969
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 3 cut(s) 219, 372, 382
AlwI GGATC 2 cut(s) 516, 1012
AoxI GGCC 2 cut(s) 428, 760
ApeKI GCWGC 5 cut(s) 130, 235, 274, 581, 921
Asp700I GAANNNNTTC 1 cut(s) 681
AspLEI GCGC 1 cut(s) 840
AsuC2I CCSGG 2 cut(s) 540, 551
AsuHPI GGTGA 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 810
BbvI GCAGC 5 cut(s) 142, 222, 261, 568, 933
BccI CCATC 4 cut(s) 408, 701, 734, 870
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 4 cut(s) 69, 81, 427, 1022
BclI TGATCA 1 cut(s) 207
BcnI CCSGG 2 cut(s) 540, 551
BcoDI GTCTC 3 cut(s) 219, 372, 382
BfaI CTAG 4 cut(s) 279, 327, 407, 902
BglII AGATCT 1 cut(s) 149
BisI GCNGC 5 cut(s) 131, 236, 275, 582, 922
BlpI GCTNAGC 1 cut(s) 794
BlsI GCNGC 5 cut(s) 132, 237, 276, 583, 923
Bme1390I CCNGG 6 cut(s) 69, 81, 427, 540, 551, 1022
BmrFI CCNGG 6 cut(s) 69, 81, 427, 540, 551, 1022
BmsI GCATC 3 cut(s) 82, 142, 914
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 1 cut(s) 394
Bpu1102I GCTNAGC 1 cut(s) 794
BpuEI CTTGAG 1 cut(s) 168
BpuMI CCSGG 2 cut(s) 540, 551
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 4 cut(s) 67, 68, 621, 670
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bse118I RCCGGY 1 cut(s) 869
Bse1I ACTGG 2 cut(s) 116, 202
BseBI CCWGG 4 cut(s) 69, 81, 427, 1022
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 67, 68, 621, 670
BseGI GGATG 4 cut(s) 400, 559, 858, 862
BseMII CTCAG 2 cut(s) 167, 446
BseNI ACTGG 2 cut(s) 116, 202
BseXI GCAGC 5 cut(s) 142, 222, 261, 568, 933
BseYI CCCAGC 2 cut(s) 595, 965
Bsh1236I CGCG 1 cut(s) 838
Bsh1285I CGRYCG 1 cut(s) 1009
BshFI GGCC 2 cut(s) 430, 762
BshVI ATCGAT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 1009
BsiHKAI GWGCWC 1 cut(s) 810
BsiSI CCGG 4 cut(s) 540, 550, 870, 918
BslFI GGGAC 1 cut(s) 543
BsmAI GTCTC 3 cut(s) 219, 372, 382
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 2 cut(s) 430, 762
Bsp1286I GDGCHC 1 cut(s) 810
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 5 cut(s) 149, 207, 508, 1006, 1017
Bsp1720I GCTNAGC 1 cut(s) 794
BspACI CCGC 3 cut(s) 410, 440, 989
BspANI GGCC 2 cut(s) 430, 762
BspCNI CTCAG 2 cut(s) 166, 445
BspDI ATCGAT 1 cut(s) 420
BspFNI CGCG 1 cut(s) 838
BspPI GGATC 2 cut(s) 516, 1012
BsrFI RCCGGY 1 cut(s) 869
BsrGI TGTACA 1 cut(s) 973
BsrI ACTGG 2 cut(s) 116, 202
BssAI RCCGGY 1 cut(s) 869
BssECI CCNNGG 4 cut(s) 67, 68, 621, 670
BssMI GATC 5 cut(s) 149, 207, 508, 1006, 1017
BssT1I CCWWGG 2 cut(s) 621, 670
Bst2UI CCWGG 4 cut(s) 69, 81, 427, 1022
Bst4CI ACNGT 2 cut(s) 847, 933
Bst6I CTCTTC 1 cut(s) 666
BstAUI TGTACA 1 cut(s) 973
BstC8I GCNNGC 3 cut(s) 601, 871, 891
BstDEI CTNAG 5 cut(s) 153, 315, 432, 794, 909
BstF5I GGATG 4 cut(s) 400, 559, 858, 862
BstFNI CGCG 1 cut(s) 838
BstHHI GCGC 1 cut(s) 840
BstKTI GATC 5 cut(s) 152, 210, 511, 1009, 1020
BstMAI GTCTC 3 cut(s) 219, 372, 382
BstMBI GATC 5 cut(s) 149, 207, 508, 1006, 1017
BstMCI CGRYCG 1 cut(s) 1009
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 4 cut(s) 69, 81, 427, 1022
BstSCI CCNGG 6 cut(s) 67, 79, 425, 538, 549, 1020
BstUI CGCG 1 cut(s) 838
BstV1I GCAGC 5 cut(s) 142, 222, 261, 568, 933
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 3 cut(s) 149, 508, 1017
BstYI RGATCY 3 cut(s) 149, 508, 1017
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 2 cut(s) 430, 762
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 4 cut(s) 400, 559, 858, 862
BtsI GCAGTG 2 cut(s) 480, 805
BtsIMutI CAGTG 3 cut(s) 480, 805, 929
Cac8I GCNNGC 3 cut(s) 601, 871, 891
CfoI GCGC 1 cut(s) 840
Cfr10I RCCGGY 1 cut(s) 869
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 1 cut(s) 84
Csp6I GTAC 3 cut(s) 44, 974, 995
CviAII CATG 5 cut(s) 29, 215, 577, 686, 986
CviQI GTAC 3 cut(s) 44, 974, 995
DdeI CTNAG 5 cut(s) 153, 315, 432, 794, 909
DpnI GATC 5 cut(s) 151, 209, 510, 1008, 1019
DpnII GATC 5 cut(s) 149, 207, 508, 1006, 1017
DraI TTTAAA 1 cut(s) 937
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco130I CCWWGG 2 cut(s) 621, 670
Eco57I CTGAAG 2 cut(s) 327, 677
EcoRII CCWGG 4 cut(s) 67, 79, 425, 1020
EcoT14I CCWWGG 2 cut(s) 621, 670
ErhI CCWWGG 2 cut(s) 621, 670
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 5 cut(s) 32, 218, 580, 689, 989
FaqI GGGAC 1 cut(s) 543
FatI CATG 5 cut(s) 28, 214, 576, 685, 985
FauI CCCGC 1 cut(s) 982
FauNDI CATATG 1 cut(s) 765
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 5 cut(s) 131, 236, 275, 582, 922
FokI GGATG 4 cut(s) 387, 566, 845, 849
Fsp4HI GCNGC 5 cut(s) 131, 236, 275, 582, 922
FspBI CTAG 4 cut(s) 279, 327, 407, 902
GlaI GCGC 1 cut(s) 839
GluI GCNGC 5 cut(s) 131, 236, 275, 582, 922
GsaI CCCAGC 2 cut(s) 599, 969
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 2 cut(s) 430, 762
HapII CCGG 4 cut(s) 540, 550, 870, 918
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 840
Hin1II CATG 5 cut(s) 32, 218, 580, 689, 989
Hin6I GCGC 1 cut(s) 838
HinP1I GCGC 1 cut(s) 838
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HindIII AAGCTT 2 cut(s) 488, 613
HinfI GANTC 5 cut(s) 50, 311, 380, 422, 914
HpaI GTTAAC 1 cut(s) 754
HpaII CCGG 4 cut(s) 540, 550, 870, 918
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 2 cut(s) 334, 754
Hpy188I TCNGA 3 cut(s) 307, 435, 513
Hpy188III TCNNGA 5 cut(s) 185, 327, 373, 452, 700
Hpy8I GTNNAC 2 cut(s) 334, 754
HpyAV CCTTC 3 cut(s) 244, 355, 515
HpyCH4III ACNGT 2 cut(s) 847, 933
HpyCH4V TGCA 6 cut(s) 130, 367, 473, 571, 893, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 5 cut(s) 153, 315, 432, 794, 909
Hsp92II CATG 5 cut(s) 32, 218, 580, 689, 989
HspAI GCGC 1 cut(s) 838
KroI GCCGGC 1 cut(s) 869
KroNI GCCGGC 1 cut(s) 871
Ksp22I TGATCA 1 cut(s) 207
KspAI GTTAAC 1 cut(s) 754
Kzo9I GATC 5 cut(s) 149, 207, 508, 1006, 1017
Lsp1109I GCAGC 5 cut(s) 142, 222, 261, 568, 933
LweI GCATC 3 cut(s) 82, 142, 914
MaeI CTAG 4 cut(s) 279, 327, 407, 902
MaeIII GTNAC 2 cut(s) 782, 847
MalI GATC 5 cut(s) 151, 209, 510, 1008, 1019
MboI GATC 5 cut(s) 149, 207, 508, 1006, 1017
MboII GAAGA 8 cut(s) 190, 296, 320, 653, 656, 683, 689, 953
MflI RGATCY 3 cut(s) 149, 508, 1017
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 1 cut(s) 586
MlyI GAGTC 2 cut(s) 374, 908
MmeI TCCRAC 1 cut(s) 202
MroNI GCCGGC 1 cut(s) 869
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 4 cut(s) 617, 648, 753, 936
MspI CCGG 4 cut(s) 540, 550, 870, 918
MspR9I CCNGG 6 cut(s) 69, 81, 427, 540, 551, 1022
MvaI CCWGG 4 cut(s) 69, 81, 427, 1022
MvnI CGCG 1 cut(s) 838
MwoI GCNNNNNNNGC 1 cut(s) 479
NaeI GCCGGC 1 cut(s) 871
NciI CCSGG 2 cut(s) 540, 551
NdeI CATATG 1 cut(s) 765
NdeII GATC 5 cut(s) 149, 207, 508, 1006, 1017
NgoMIV GCCGGC 1 cut(s) 869
NlaIII CATG 5 cut(s) 32, 218, 580, 689, 989
NmeAIII GCCGAG 1 cut(s) 829
PasI CCCWGGG 1 cut(s) 68
PdiI GCCGGC 1 cut(s) 871
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 50, 311, 422
PfoI TCCNGGA 1 cut(s) 549
PkrI GCNGC 5 cut(s) 132, 237, 276, 583, 923
Ple19I CGATCG 1 cut(s) 1009
PleI GAGTC 2 cut(s) 374, 908
PpsI GAGTC 2 cut(s) 374, 908
Psp6I CCWGG 4 cut(s) 67, 79, 425, 1020
PspFI CCCAGC 2 cut(s) 595, 965
PspGI CCWGG 4 cut(s) 67, 79, 425, 1020
PsuI RGATCY 3 cut(s) 149, 508, 1017
PvuI CGATCG 1 cut(s) 1009
RsaI GTAC 3 cut(s) 45, 975, 996
RsaNI GTAC 3 cut(s) 44, 974, 995
SaqAI TTAA 4 cut(s) 617, 648, 753, 936
SatI GCNGC 5 cut(s) 131, 236, 275, 582, 922
Sau3AI GATC 5 cut(s) 149, 207, 508, 1006, 1017
SchI GAGTC 2 cut(s) 374, 908
ScrFI CCNGG 6 cut(s) 69, 81, 427, 540, 551, 1022
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 3 cut(s) 82, 142, 914
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 1 cut(s) 586
SsiI CCGC 3 cut(s) 410, 440, 989
SspMI CTAG 4 cut(s) 279, 327, 407, 902
StyD4I CCNGG 6 cut(s) 67, 79, 425, 538, 549, 1020
StyI CCWWGG 2 cut(s) 621, 670
TaaI ACNGT 2 cut(s) 847, 933
TaqI TCGA 2 cut(s) 420, 1005
TasI AATT 1 cut(s) 586
TatI WGTACW 1 cut(s) 973
TfiI GAWTC 3 cut(s) 50, 311, 422
Tru1I TTAA 4 cut(s) 617, 648, 753, 936
Tru9I TTAA 4 cut(s) 617, 648, 753, 936
TscAI CASTG 3 cut(s) 480, 805, 936
TseI GCWGC 5 cut(s) 130, 235, 274, 581, 921
TspDTI ATGAA 3 cut(s) 570, 674, 847
TspRI CASTG 3 cut(s) 480, 805, 936
XbaI TCTAGA 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 4 cut(s) 279, 327, 407, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.