RLG00000008705

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000429
Physical Location & Seq
Forward (+)
35458097 .. 35460886
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008705

Sequence Viewer

Length: 939 bp
ATGGAGAAGCTTGTTTCTAGCTGGTACAATAATGTTCAACCCCTGCCTGAGACTTACATATTCCCACCCAATGCAAGACCGGGGAAGCTTAGCACTCTTCCTTCATCTGACAACATTCCAGTGATTAATCTTGGTGGTGGTGGAGCAGAAGGTCATGATCGAACTCGTATAGTTGAGCAAATACTTGAGGCTAGCCAAGAGTTCGGGTTTTTTCAGGTAATCAACCACGGCATATCAGAAAATTTGTTGCATGACACCATGGATGTGTTCAGGGAGTTTTTTGCGTTGCCTCCAGAGGACAAGGCAAGCTTCTTCTCTGAGGACCCCAACAAACTCTGCAGGCTCATAACTAGCACTGGAAATTATGATAGGGAGAGTGTTCATCTTTGGCGCGATGTCCTCCGACACCCTTGTCACCCTTTAGAGAAATTCATTCCACTTTGGCCTCAACAACCGCTTAAATATCGAGAGCATGTTGGCAAATGTTCTACCCAAGTGAGGAAAGTAGCTTTGAACATTTTAGACTTGATCAGTGAAGGACTTGGGATTGGATATGGGCACTTCAGTGATGAACTTAGCCAAGAGACTCTACTCTCAGTTAATTATTATCCACCTTGCCCAAATCCAAGTTTGACATTAGGAATAACTAAACACTGTGACCCAAAGCTCATCACAATTTTACTTCAAGGGGATGTACCTGGCCTTCAGGTTTTTAAGGATGGGAAATGGATTGGTGTGGAACCTCTTCCGCAAGGACTAGTGGTTAACATAGGCTATCAGCTACAGATCATAAGTAATGGGAAGCTGAAAAAAGACAAGACAACTAGTGGAACTTTATTTGTAGCCAAGCTACAGCCTATGGTTAATTTGGAACAGAAAAGATCATCAAATCATCACGAAGGTGCTGCAGCTGCTCATGCAGCAGAACTGGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

313

Amino Acids

34.85

Weight (kDa)

6.18

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 39 - 150 4.4e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 197 - 270 2.4e-24 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 411
AccII CGCG 1 cut(s) 393
AciI CCGC 2 cut(s) 455, 749
AcsI RAATTY 2 cut(s) 241, 428
AcuI CTGAAG 2 cut(s) 547, 689
AfaI GTAC 2 cut(s) 26, 696
AfiI CCNNNNNNNGG 1 cut(s) 498
AgsI TTSAA 3 cut(s) 38, 514, 686
AhlI ACTAGT 2 cut(s) 757, 824
AjnI CCWGG 1 cut(s) 697
AleI CACNNNNGTG 2 cut(s) 564, 900
Alw26I GTCTC 2 cut(s) 44, 578
AoxI GGCC 2 cut(s) 443, 700
ApeKI GCWGC 4 cut(s) 905, 908, 911, 920
ApoI RAATTY 2 cut(s) 241, 428
AseI ATTAAT 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 407
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 561
BarI GAAGNNNNNNTAC 2 cut(s) 687, 719
BbvI GCAGC 4 cut(s) 892, 898, 920, 932
BccI CCATC 1 cut(s) 713
BceAI ACGGC 1 cut(s) 244
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BciT130I CCWGG 1 cut(s) 699
BclI TGATCA 1 cut(s) 528
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 44, 578
BcuI ACTAGT 2 cut(s) 757, 824
BfaI CTAG 5 cut(s) 18, 192, 351, 758, 825
BfmI CTRYAG 4 cut(s) 337, 782, 851, 906
BisI GCNGC 4 cut(s) 906, 909, 912, 921
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 4 cut(s) 907, 910, 913, 922
Bme1390I CCNGG 2 cut(s) 81, 699
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 2 cut(s) 324, 741
BmrFI CCNGG 2 cut(s) 81, 699
BmtI GCTAGC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 80, 226, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse1I ACTGG 3 cut(s) 119, 361, 933
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 3 cut(s) 80, 226, 258
BseGI GGATG 3 cut(s) 268, 697, 724
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMII CTCAG 3 cut(s) 39, 309, 609
BseNI ACTGG 3 cut(s) 119, 361, 933
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 4 cut(s) 892, 898, 920, 932
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 2 cut(s) 445, 702
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 498
BsmAI GTCTC 2 cut(s) 44, 578
BsnI GGCC 2 cut(s) 445, 702
Bsp1286I GDGCHC 1 cut(s) 561
Bsp143I GATC 4 cut(s) 157, 528, 786, 881
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 2 cut(s) 455, 749
BspANI GGCC 2 cut(s) 445, 702
BspCNI CTCAG 3 cut(s) 40, 310, 608
BspFNI CGCG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 324, 741
BspMAI CTGCAG 2 cut(s) 341, 910
BspOI GCTAGC 1 cut(s) 195
BsrI ACTGG 3 cut(s) 119, 361, 933
BssECI CCNNGG 3 cut(s) 80, 226, 258
BssMI GATC 4 cut(s) 157, 528, 786, 881
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 2 cut(s) 102, 750
BstC8I GCNNGC 3 cut(s) 193, 307, 341
BstDEI CTNAG 5 cut(s) 48, 89, 318, 575, 595
BstDSI CCRYGG 2 cut(s) 226, 258
BstF5I GGATG 3 cut(s) 268, 697, 724
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 4 cut(s) 160, 531, 789, 884
BstMAI GTCTC 2 cut(s) 44, 578
BstMBI GATC 4 cut(s) 157, 528, 786, 881
BstMWI GCNNNNNNNGC 3 cut(s) 911, 917, 920
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 79, 697
BstSFI CTRYAG 4 cut(s) 337, 782, 851, 906
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 4 cut(s) 892, 898, 920, 932
BsuRI GGCC 2 cut(s) 445, 702
BtgI CCRYGG 2 cut(s) 226, 258
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 3 cut(s) 268, 697, 724
BtsIMutI CAGTG 5 cut(s) 126, 354, 538, 571, 652
Cac8I GCNNGC 3 cut(s) 193, 307, 341
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 25, 695
CviAII CATG 5 cut(s) 155, 251, 259, 473, 917
CviQI GTAC 2 cut(s) 25, 695
DdeI CTNAG 5 cut(s) 48, 89, 318, 575, 595
DpnI GATC 4 cut(s) 159, 530, 788, 883
DpnII GATC 4 cut(s) 157, 528, 786, 881
DrdI GACNNNNNNGTC 1 cut(s) 411
DseDI GACNNNNNNGTC 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 102, 750
EarI CTCTTC 2 cut(s) 102, 750
Eco130I CCWWGG 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 547, 689
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 5 cut(s) 158, 254, 262, 476, 920
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 5 cut(s) 154, 250, 258, 472, 916
FbaI TGATCA 1 cut(s) 528
Fnu4HI GCNGC 4 cut(s) 906, 909, 912, 921
FokI GGATG 3 cut(s) 275, 704, 731
Fsp4HI GCNGC 4 cut(s) 906, 909, 912, 921
FspBI CTAG 5 cut(s) 18, 192, 351, 758, 825
GlaI GCGC 1 cut(s) 392
GluI GCNGC 4 cut(s) 906, 909, 912, 921
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 445, 702
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 393
Hin1II CATG 5 cut(s) 158, 254, 262, 476, 920
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 3 cut(s) 8, 86, 307
HinfI GANTC 1 cut(s) 586
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 766
Hpy188I TCNGA 4 cut(s) 109, 238, 319, 404
Hpy188III TCNNGA 4 cut(s) 155, 293, 467, 896
Hpy8I GTNNAC 1 cut(s) 766
HpyAV CCTTC 5 cut(s) 111, 143, 530, 713, 893
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4V TGCA 5 cut(s) 74, 250, 339, 908, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 911, 917, 920
HpyF3I CTNAG 5 cut(s) 48, 89, 318, 575, 595
Hsp92II CATG 5 cut(s) 158, 254, 262, 476, 920
HspAI GCGC 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 528
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 4 cut(s) 157, 528, 786, 881
LmnI GCTCC 1 cut(s) 143
Lsp1109I GCAGC 4 cut(s) 892, 898, 920, 932
MaeI CTAG 5 cut(s) 18, 192, 351, 758, 825
MaeIII GTNAC 2 cut(s) 413, 656
MalI GATC 4 cut(s) 159, 530, 788, 883
MboI GATC 4 cut(s) 157, 528, 786, 881
MboII GAAGA 3 cut(s) 89, 304, 737
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 6 cut(s) 241, 361, 428, 601, 675, 865
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 8 cut(s) 181, 289, 300, 313, 410, 456, 492, 753
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 6 cut(s) 126, 459, 600, 714, 765, 864
MslI CAYNNNNRTG 4 cut(s) 119, 263, 564, 900
MspA1I CMGCKG 1 cut(s) 911
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 81, 699
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 3 cut(s) 911, 917, 920
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 258
NdeII GATC 4 cut(s) 157, 528, 786, 881
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 5 cut(s) 158, 254, 262, 476, 920
NlaIV GGNNCC 2 cut(s) 324, 741
NmuCI GTSAC 2 cut(s) 413, 656
NspI RCATGY 1 cut(s) 476
OliI CACNNNNGTG 2 cut(s) 564, 900
PagI TCATGA 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 744
PkrI GCNGC 4 cut(s) 907, 910, 913, 922
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PpuMI RGGWCCY 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 697
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 2 cut(s) 324, 741
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
PstI CTGCAG 2 cut(s) 341, 910
PvuII CAGCTG 1 cut(s) 911
RsaI GTAC 2 cut(s) 26, 696
RsaNI GTAC 2 cut(s) 25, 695
RseI CAYNNNNRTG 4 cut(s) 119, 263, 564, 900
SaqAI TTAA 6 cut(s) 126, 459, 600, 714, 765, 864
SatI GCNGC 4 cut(s) 906, 909, 912, 921
Sau3AI GATC 4 cut(s) 157, 528, 786, 881
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 2 cut(s) 81, 699
SduI GDGCHC 1 cut(s) 561
SfcI CTRYAG 4 cut(s) 337, 782, 851, 906
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 4 cut(s) 119, 263, 564, 900
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 2 cut(s) 757, 824
Sse9I AATT 6 cut(s) 241, 361, 428, 601, 675, 865
SsiI CCGC 2 cut(s) 455, 749
SspMI CTAG 5 cut(s) 18, 192, 351, 758, 825
StyD4I CCNGG 2 cut(s) 79, 697
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 656
TaqI TCGA 2 cut(s) 160, 466
TasI AATT 6 cut(s) 241, 361, 428, 601, 675, 865
Tru1I TTAA 6 cut(s) 126, 459, 600, 714, 765, 864
Tru9I TTAA 6 cut(s) 126, 459, 600, 714, 765, 864
TscAI CASTG 5 cut(s) 126, 361, 538, 571, 659
TseFI GTSAC 2 cut(s) 413, 656
TseI GCWGC 4 cut(s) 905, 908, 911, 920
Tsp45I GTSAC 2 cut(s) 413, 656
TspDTI ATGAA 4 cut(s) 93, 371, 421, 585
TspRI CASTG 5 cut(s) 126, 361, 538, 571, 659
VpaK11BI GGWCC 1 cut(s) 322
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 2 cut(s) 241, 428
XceI RCATGY 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 5 cut(s) 18, 192, 351, 758, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.