MD10G1189900.v1.1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000429
Physical Location & Seq
Forward (+)
28695026 .. 28695492
467 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1189900.v1.1.491

Sequence Viewer

Length: 231 bp
ATGGACTTCAAGTTTTCAAAGACAGGGAATGGATCAGTGTGGAGCCTATTTCACAAGCACTGGTGGTTAACATTGGCCATCAGCTACAGTAATGGGAAGCTGAAAAGTGCTGAACATCGGGCAGTGACGAGTTCAAGCCATTCCAGGACATCTGCTGCATTTTTCACCGCGCATTCAGACGATTGCATTGTAGAACCTGCTGGAGCTCTTATTAGTGCAAGCAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

77

Amino Acids

8.28

Weight (kDa)

8.98

Isoelectric Point (pI)

8.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AccII CGCG 1 cut(s) 170
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 75
AgsI TTSAA 3 cut(s) 10, 18, 135
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 3 cut(s) 84, 100, 206
AluI AGCT 3 cut(s) 84, 100, 206
Alw21I GWGCWC 1 cut(s) 208
AlwI GGATC 1 cut(s) 40
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 157
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 145
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 77
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 65
BssMI GATC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 220
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 85
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 42, 58, 129
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 1 cut(s) 172
CviJI RGCY 6 cut(s) 45, 77, 84, 100, 138, 206
CviKI_1 RGCY 6 cut(s) 45, 77, 84, 100, 138, 206
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 208
FaiI YATR 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 77
HhaI GCGC 1 cut(s) 172
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HpaI GTTAAC 1 cut(s) 69
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 158, 186, 218
HspAI GCGC 1 cut(s) 170
KspAI GTTAAC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 2 cut(s) 42, 203
LpnPI CCDG 6 cut(s) 9, 46, 130, 157, 186, 210
Lsp1109I GCAGC 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 77
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 145
MvnI CGCG 1 cut(s) 170
NdeII GATC 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 124
PctI GAATGC 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 143
PkrI GCNGC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 208
SetI ASST 4 cut(s) 86, 102, 199, 208
SfcI CTRYAG 1 cut(s) 85
SsiI CCGC 1 cut(s) 168
SstI GAGCTC 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 89
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 3 cut(s) 42, 65, 129
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 124
TspRI CASTG 3 cut(s) 42, 65, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.