Rmu_sc0001038.1_g000007

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001038.1
OG0000429
Physical Location & Seq
Forward (+)
35061 .. 38580
3520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001038.1_g000007.1.cds

Sequence Viewer

Length: 1266 bp
atggagaagcttgttccaaactggtacagtgctgctcaacccttgcctgagacatacatattcccacctgatgcaagaccagggaagtttagcgttgctccttcaatatccaacgacattccagtgattgatctaggatcacagagtcatgatcgagctcttgtgatccagcaaatacttgaggctagccaagaattcggtttctttcaggtaatcaaccatggcataccagaagctttaatgaatgacacaatggatgtgttcaaggagttctttgagttgcctctagaggaaaagagggcaagcatctactctgatgaccccaacaaagtctgcaagctcgtacatagcagtgttaattatgattgggaggaagttcatctttggcgcgatttcctccgacacccttgtgaacctttagaaaaattcatgccaatttggcctcggaaaccgattaaatatcgagagcatgttagcaaatgtttcacccaagtgaagaaagtggctttggacattttggagttgatcggtgaaggacttggtataggatcagagtatttcaatgatgaacttagcaaagagactgacatctttgttaatcactatccaccttgtcctgacccaagtttgacacttggaataactaaacactctgacccacagctcatcacaattttacttcaaggggatgtcagtggccttcaagttctcaataaggatggcgaatggattggagtggaacctatttcaaatggactggtggttaacataggctatcaattacggatcattagtaatggaaagctcaagtgtgctgaacatcgagtggtgacgaattcaagtactcttcggacgacgattggatttttcattacaccctcccctgactgctatatagaacctgcagcagctcttattaatgcaagcaatccccgactctataaaggcttccgatatgaatgcttgaacccttcaaaatcgaatcttagcactgttgatgatgatggtgttattgctttatgttcaggagtcttccttcaaaccctagccaccaccaccgcatatattgaatccctcaatcccataattccagaaacggcggcggaatcactggaaccggctggaaaaccaccgaaccggccaccggaagtatcaaaccagctctccaagaagaaaaaaggggatccctgcactggttcaccacctttcggacgtcccattactaccaaaattttccagcagaagcgcctcgactccaagatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

421

Amino Acids

47.01

Weight (kDa)

5.49

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1216
Acc36I ACCTGC 1 cut(s) 910
AccII CGCG 1 cut(s) 390
AciI CCGC 3 cut(s) 1059, 1100, 1103
AclWI GGATC 6 cut(s) 145, 160, 556, 794, 1178, 1191
AcoI YGGCCR 1 cut(s) 1139
AcsI RAATTY 4 cut(s) 194, 425, 835, 1230
AcyI GRCGYC 1 cut(s) 1213
AfaI GTAC 3 cut(s) 26, 345, 844
AfiI CCNNNNNNNGG 3 cut(s) 1144, 1193, 1208
AjnI CCWGG 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AleI CACNNNNGTG 2 cut(s) 408, 491
AluBI AGCT 8 cut(s) 10, 158, 236, 340, 664, 805, 911, 1162
AluI AGCT 8 cut(s) 10, 158, 236, 340, 664, 805, 911, 1162
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 44, 575
AlwI GGATC 6 cut(s) 145, 160, 556, 794, 1178, 1191
AoxI GGCC 3 cut(s) 440, 697, 1139
ApeKI GCWGC 3 cut(s) 32, 905, 908
ApoI RAATTY 4 cut(s) 194, 425, 835, 1230
AseI ATTAAT 1 cut(s) 918
AspLEI GCGC 2 cut(s) 390, 1248
AsuHPI GGTGA 4 cut(s) 478, 542, 841, 1191
AsuNHI GCTAGC 1 cut(s) 185
BamHI GGATCC 1 cut(s) 1183
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 1024
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 3 cut(s) 19, 917, 920
BccI CCATC 2 cut(s) 713, 998
BceAI ACGGC 1 cut(s) 1113
BcgI CGANNNNNNTGC 2 cut(s) 942, 976
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 44, 575
BfaI CTAG 4 cut(s) 134, 186, 287, 1046
BfmI CTRYAG 1 cut(s) 903
BfoI RGCGCY 1 cut(s) 1249
BfuAI ACCTGC 1 cut(s) 910
BglI GCCNNNNNGGC 1 cut(s) 439
BisI GCNGC 4 cut(s) 33, 906, 909, 1101
BlsI GCNGC 4 cut(s) 34, 907, 910, 1102
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 3 cut(s) 741, 1116, 1185
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 61, 315
BmtI GCTAGC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 1024
BpuEI CTTGAG 2 cut(s) 200, 791
BsaHI GRCGYC 1 cut(s) 1213
BsaJI CCNNGG 3 cut(s) 80, 220, 443
BsaWI WCCGGW 1 cut(s) 1144
BsaXI ACNNNNNCTCC 2 cut(s) 1148, 1178
Bsc4I CCNNNNNNNGG 3 cut(s) 1144, 1193, 1208
Bse118I RCCGGY 2 cut(s) 1117, 1137
Bse1I ACTGG 5 cut(s) 26, 122, 762, 1116, 1198
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 80, 220, 443
BseGI GGATG 3 cut(s) 262, 694, 724
BseLI CCNNNNNNNGG 3 cut(s) 1144, 1193, 1208
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 5 cut(s) 26, 122, 762, 1116, 1198
BseXI GCAGC 3 cut(s) 19, 917, 920
BsgI GTGCAG 1 cut(s) 1174
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 3 cut(s) 442, 699, 1141
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 3 cut(s) 1118, 1138, 1145
BslFI GGGAC 1 cut(s) 1200
BslI CCNNNNNNNGG 3 cut(s) 1144, 1193, 1208
BsmAI GTCTC 2 cut(s) 44, 575
BsmFI GGGAC 1 cut(s) 1200
BsmI GAATGC 1 cut(s) 965
BsnI GGCC 3 cut(s) 442, 699, 1141
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 8 cut(s) 130, 137, 151, 165, 525, 548, 786, 1183
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 3 cut(s) 1059, 1100, 1103
BspANI GGCC 3 cut(s) 442, 699, 1141
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 3 cut(s) 741, 1116, 1185
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 1 cut(s) 910
BspOI GCTAGC 1 cut(s) 189
BspPI GGATC 6 cut(s) 145, 160, 556, 794, 1178, 1191
BsrFI RCCGGY 2 cut(s) 1117, 1137
BsrI ACTGG 5 cut(s) 26, 122, 762, 1116, 1198
BssAI RCCGGY 2 cut(s) 1117, 1137
BssECI CCNNGG 3 cut(s) 80, 220, 443
BssMI GATC 8 cut(s) 130, 137, 151, 165, 525, 548, 786, 1183
BssNI GRCGYC 1 cut(s) 1213
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 29, 994
Bst6I CTCTTC 1 cut(s) 852
BstACI GRCGYC 1 cut(s) 1213
BstC8I GCNNGC 4 cut(s) 187, 304, 338, 925
BstDEI CTNAG 3 cut(s) 48, 572, 986
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 3 cut(s) 262, 694, 724
BstFNI CGCG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 1249
BstHHI GCGC 2 cut(s) 390, 1248
BstKTI GATC 8 cut(s) 133, 140, 154, 168, 528, 551, 789, 1186
BstMAI GTCTC 2 cut(s) 44, 575
BstMBI GATC 8 cut(s) 130, 137, 151, 165, 525, 548, 786, 1183
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 903
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 19, 917, 920
BstV2I GAAGAC 1 cut(s) 1024
BstX2I RGATCY 1 cut(s) 1183
BstYI RGATCY 1 cut(s) 1183
BsuRI GGCC 3 cut(s) 442, 699, 1141
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 3 cut(s) 262, 694, 724
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 7 cut(s) 34, 129, 358, 700, 990, 1109, 1191
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 4 cut(s) 187, 304, 338, 925
CciI TCATGA 1 cut(s) 148
CfoI GCGC 2 cut(s) 390, 1248
Cfr10I RCCGGY 2 cut(s) 1117, 1137
Csp6I GTAC 3 cut(s) 25, 344, 843
CviAII CATG 4 cut(s) 149, 221, 430, 470
CviQI GTAC 3 cut(s) 25, 344, 843
DdeI CTNAG 3 cut(s) 48, 572, 986
DpnI GATC 8 cut(s) 132, 139, 153, 167, 527, 550, 788, 1185
DpnII GATC 8 cut(s) 130, 137, 151, 165, 525, 548, 786, 1183
EaeI YGGCCR 1 cut(s) 1139
Eam1104I CTCTTC 1 cut(s) 852
EarI CTCTTC 1 cut(s) 852
EciI GGCGGA 1 cut(s) 1118
Ecl136II GAGCTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 158
EcoRI GAATTC 2 cut(s) 194, 835
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 4 cut(s) 152, 224, 433, 473
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 366, 398
FaqI GGGAC 1 cut(s) 1200
FatI CATG 4 cut(s) 148, 220, 429, 469
Fnu4HI GCNGC 4 cut(s) 33, 906, 909, 1101
FokI GGATG 3 cut(s) 269, 701, 731
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 4 cut(s) 33, 906, 909, 1101
FspBI CTAG 4 cut(s) 134, 186, 287, 1046
GlaI GCGC 2 cut(s) 389, 1247
GluI GCNGC 4 cut(s) 33, 906, 909, 1101
HaeII RGCGCY 1 cut(s) 1249
HaeIII GGCC 3 cut(s) 442, 699, 1141
HapII CCGG 3 cut(s) 1118, 1138, 1145
HhaI GCGC 2 cut(s) 390, 1248
Hin1I GRCGYC 1 cut(s) 1213
Hin1II CATG 4 cut(s) 152, 224, 433, 473
Hin6I GCGC 2 cut(s) 388, 1246
HinP1I GCGC 2 cut(s) 388, 1246
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 2 cut(s) 8, 234
HinfI GANTC 7 cut(s) 145, 936, 982, 1029, 1070, 1106, 1253
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 3 cut(s) 1118, 1138, 1145
HphI GGTGA 4 cut(s) 478, 542, 841, 1191
Hpy166II GTNNAC 3 cut(s) 413, 766, 1199
Hpy188I TCNGA 8 cut(s) 316, 401, 447, 553, 655, 852, 953, 1211
Hpy188III TCNNGA 6 cut(s) 149, 287, 464, 617, 1026, 1091
Hpy8I GTNNAC 3 cut(s) 413, 766, 1199
Hpy99I CGWCG 1 cut(s) 859
HpyAV CCTTC 5 cut(s) 111, 527, 710, 981, 1046
HpyCH4III ACNGT 2 cut(s) 29, 994
HpyCH4IV ACGT 1 cut(s) 1213
HpyCH4V TGCA 5 cut(s) 74, 336, 905, 923, 1191
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 3 cut(s) 48, 572, 986
HpySE526I ACGT 1 cut(s) 1213
Hsp92I GRCGYC 1 cut(s) 1213
Hsp92II CATG 4 cut(s) 152, 224, 433, 473
HspAI GCGC 2 cut(s) 388, 1246
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 8 cut(s) 130, 137, 151, 165, 525, 548, 786, 1183
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 19, 917, 920
LweI GCATC 2 cut(s) 61, 315
MaeI CTAG 4 cut(s) 134, 186, 287, 1046
MaeII ACGT 1 cut(s) 1213
MaeIII GTNAC 1 cut(s) 829
MalI GATC 8 cut(s) 132, 139, 153, 167, 527, 550, 788, 1185
MboI GATC 8 cut(s) 130, 137, 151, 165, 525, 548, 786, 1183
MboII GAAGA 4 cut(s) 508, 839, 1024, 1183
MflI RGATCY 1 cut(s) 1183
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 9 cut(s) 194, 358, 425, 435, 672, 779, 835, 1086, 1230
MlyI GAGTC 4 cut(s) 154, 930, 1038, 1247
MmeI TCCRAC 2 cut(s) 135, 424
MseI TTAA 6 cut(s) 239, 357, 456, 597, 765, 918
MslI CAYNNNNRTG 4 cut(s) 122, 351, 408, 491
MspI CCGG 3 cut(s) 1118, 1138, 1145
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 965
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 439
NcoI CCATGG 1 cut(s) 220
NdeII GATC 8 cut(s) 130, 137, 151, 165, 525, 548, 786, 1183
NheI GCTAGC 1 cut(s) 185
NlaIII CATG 4 cut(s) 152, 224, 433, 473
NlaIV GGNNCC 3 cut(s) 741, 1116, 1185
NmuCI GTSAC 1 cut(s) 829
NspI RCATGY 1 cut(s) 473
OliI CACNNNNGTG 2 cut(s) 408, 491
PagI TCATGA 1 cut(s) 148
PctI GAATGC 1 cut(s) 965
PfeI GAWTC 3 cut(s) 982, 1070, 1106
PkrI GCNGC 4 cut(s) 34, 907, 910, 1102
PleI GAGTC 4 cut(s) 153, 930, 1037, 1247
PpsI GAGTC 4 cut(s) 153, 930, 1037, 1247
PshBI ATTAAT 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 741, 1116, 1185
PstI CTGCAG 1 cut(s) 907
PsuI RGATCY 1 cut(s) 1183
RsaI GTAC 3 cut(s) 26, 345, 844
RsaNI GTAC 3 cut(s) 25, 344, 843
RseI CAYNNNNRTG 4 cut(s) 122, 351, 408, 491
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 6 cut(s) 239, 357, 456, 597, 765, 918
SatI GCNGC 4 cut(s) 33, 906, 909, 1101
Sau3AI GATC 8 cut(s) 130, 137, 151, 165, 525, 548, 786, 1183
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 4 cut(s) 154, 930, 1038, 1247
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 160
SfaNI GCATC 2 cut(s) 61, 315
SfcI CTRYAG 1 cut(s) 903
SmiMI CAYNNNNRTG 4 cut(s) 122, 351, 408, 491
SmlI CTYRAG 2 cut(s) 179, 806
SmoI CTYRAG 2 cut(s) 179, 806
Sse9I AATT 9 cut(s) 194, 358, 425, 435, 672, 779, 835, 1086, 1230
SsiI CCGC 3 cut(s) 1059, 1100, 1103
SspMI CTAG 4 cut(s) 134, 186, 287, 1046
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 29, 994
TaiI ACGT 1 cut(s) 1216
TaqI TCGA 5 cut(s) 154, 463, 823, 980, 1251
TasI AATT 9 cut(s) 194, 358, 425, 435, 672, 779, 835, 1086, 1230
TatI WGTACW 1 cut(s) 842
TauI GCSGC 1 cut(s) 1103
TfiI GAWTC 3 cut(s) 982, 1070, 1106
Tru1I TTAA 6 cut(s) 239, 357, 456, 597, 765, 918
Tru9I TTAA 6 cut(s) 239, 357, 456, 597, 765, 918
TscAI CASTG 7 cut(s) 34, 129, 358, 700, 997, 1116, 1198
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 3 cut(s) 32, 905, 908
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 6 cut(s) 257, 368, 418, 582, 859, 972
TspGWI ACGGA 1 cut(s) 799
TspRI CASTG 7 cut(s) 34, 129, 358, 700, 997, 1116, 1198
VspI ATTAAT 1 cut(s) 918
XapI RAATTY 4 cut(s) 194, 425, 835, 1230
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 1 cut(s) 473
XspI CTAG 4 cut(s) 134, 186, 287, 1046
ZraI GACGTC 1 cut(s) 1214
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.