Rmu_sc0006439.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006439.1
OG0000429
Physical Location & Seq
Reverse (-)
2294 .. 3252
959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006439.1_g000001.1.cds

Sequence Viewer

Length: 777 bp
atggatgtgttcagggagttttttgctttgcctccagaagacaaggcaagcttcttctctgaggaccccaacaaactctgcaggctcataactagcaccggaaattatgacagggagaatgttcatctttggcgcgatgccctccgacacccttgtcaccctttagaaaaattcattccactttggcctcaacaaccgcttaaatatcgagagcatgttggcaaatgttccacccaagtgaggaaagtagctttgaacattttagacttgatcagtgaaggacttgggattggatatgggcacttcagcgatgaacttagccaagagactctactctcagttaattattatccaccttgtccagatccaagtttgacattaggaataactaaacactgtgatccaaacctcatcacaattttacttcaaggggatgtacatggccttcaggtttttaaggatgggaaatggattggtgtggaacctcttccacaaggactagtggttaacataggctatcagttacagatcataagtaatgggaagctgaagtgtgctgaacatcgagcagtgacaaattcaagtaatgctcggacatctgctgcatttttcattgcaccttcccaagattgcaatatacaacctgcaacagctcttatcaatgcaagtaatcctcaaatctataagggcttccaatacaaagagttcctttccaactacctaatgaagcagggcaacaccgaagttgtacttgagccctttaaactccaaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

258

Amino Acids

29.08

Weight (kDa)

6.44

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 652
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 197
AclWI GGATC 2 cut(s) 359, 395
AcsI RAATTY 3 cut(s) 170, 577, 771
AcuI CTGAAG 3 cut(s) 289, 431, 569
AfaI GTAC 2 cut(s) 438, 750
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 3 cut(s) 256, 428, 582
AhlI ACTAGT 1 cut(s) 499
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 4 cut(s) 51, 251, 547, 653
AluI AGCT 4 cut(s) 51, 251, 547, 653
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 2 cut(s) 359, 395
AoxI GGCC 2 cut(s) 185, 442
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 3 cut(s) 170, 577, 771
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 759
BarI GAAGNNNNNNTAC 2 cut(s) 429, 461
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 589
BccI CCATC 1 cut(s) 455
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 320
BcuI ACTAGT 1 cut(s) 499
BfaI CTAG 2 cut(s) 93, 500
BfmI CTRYAG 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 652
BisI GCNGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 604
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 66, 483
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 773
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 612
BseGI GGATG 3 cut(s) 10, 439, 466
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 51, 351
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 1 cut(s) 589
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 187, 444
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 2 cut(s) 187, 444
Bsp1286I GDGCHC 2 cut(s) 303, 759
Bsp1407I TGTACA 1 cut(s) 436
Bsp143I GATC 4 cut(s) 270, 364, 400, 528
BspACI CCGC 1 cut(s) 197
BspANI GGCC 2 cut(s) 187, 444
BspCNI CTCAG 2 cut(s) 52, 350
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 66, 483
BspMAI CTGCAG 1 cut(s) 83
BspMI ACCTGC 1 cut(s) 652
BspPI GGATC 2 cut(s) 359, 395
BsrDI GCAATG 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 436
BssMI GATC 4 cut(s) 270, 364, 400, 528
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 492
BstAUI TGTACA 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 49, 83
BstDEI CTNAG 3 cut(s) 60, 317, 337
BstF5I GGATG 3 cut(s) 10, 439, 466
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 4 cut(s) 273, 367, 403, 531
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 4 cut(s) 270, 364, 400, 528
BstNSI RCATGY 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 303
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 2 cut(s) 187, 444
BtgZI GCGATG 2 cut(s) 150, 324
BtsCI GGATG 3 cut(s) 10, 439, 466
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 3 cut(s) 280, 394, 576
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 2 cut(s) 49, 83
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 437, 749
CviAII CATG 2 cut(s) 215, 440
CviQI GTAC 2 cut(s) 437, 749
DdeI CTNAG 3 cut(s) 60, 317, 337
DpnI GATC 4 cut(s) 272, 366, 402, 530
DpnII GATC 4 cut(s) 270, 364, 400, 528
DraI TTTAAA 1 cut(s) 763
DrdI GACNNNNNNGTC 1 cut(s) 153
DseDI GACNNNNNNGTC 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 3 cut(s) 289, 431, 569
EcoO109I RGGNCCY 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 759
FaeI CATG 2 cut(s) 218, 443
FaiI YATR 9 cut(s) 89, 108, 216, 297, 441, 512, 533, 638, 684
FalI AAGNNNNNCTT 6 cut(s) 35, 67, 693, 725, 735, 767
FatI CATG 2 cut(s) 214, 439
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 3 cut(s) 17, 446, 473
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 2 cut(s) 93, 500
GlaI GCGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 603
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 187, 444
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 135
Hin1II CATG 2 cut(s) 218, 443
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 1 cut(s) 328
HpaI GTTAAC 1 cut(s) 508
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 3 cut(s) 61, 146, 594
Hpy188III TCNNGA 3 cut(s) 35, 209, 362
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 3 cut(s) 272, 455, 630
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 6 cut(s) 81, 605, 617, 633, 647, 665
HpyF3I CTNAG 3 cut(s) 60, 317, 337
Hsp92II CATG 2 cut(s) 218, 443
HspAI GCGC 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 270
KspAI GTTAAC 1 cut(s) 508
Kzo9I GATC 4 cut(s) 270, 364, 400, 528
LpnPI CCDG 8 cut(s) 48, 67, 97, 112, 375, 434, 657, 716
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 1 cut(s) 127
MaeI CTAG 2 cut(s) 93, 500
MaeIII GTNAC 3 cut(s) 155, 522, 571
MalI GATC 4 cut(s) 272, 366, 402, 530
MboI GATC 4 cut(s) 270, 364, 400, 528
MboII GAAGA 3 cut(s) 46, 50, 479
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 303, 759
MluCI AATT 6 cut(s) 103, 170, 343, 417, 577, 771
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 2 cut(s) 169, 738
MnlI CCTC 8 cut(s) 42, 55, 152, 198, 234, 419, 495, 684
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 5 cut(s) 201, 342, 456, 507, 762
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 135
NdeII GATC 4 cut(s) 270, 364, 400, 528
NlaIII CATG 2 cut(s) 218, 443
NlaIV GGNNCC 2 cut(s) 66, 483
NmuCI GTSAC 2 cut(s) 155, 571
NspI RCATGY 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 486
PkrI GCNGC 1 cut(s) 604
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 66, 483
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
PstI CTGCAG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 2 cut(s) 438, 750
RsaNI GTAC 2 cut(s) 437, 749
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 5 cut(s) 201, 342, 456, 507, 762
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 4 cut(s) 270, 364, 400, 528
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 322
SduI GDGCHC 2 cut(s) 303, 759
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SpeI ACTAGT 1 cut(s) 499
Sse9I AATT 6 cut(s) 103, 170, 343, 417, 577, 771
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 93, 500
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 2 cut(s) 208, 565
TasI AATT 6 cut(s) 103, 170, 343, 417, 577, 771
TatI WGTACW 2 cut(s) 436, 748
Tru1I TTAA 5 cut(s) 201, 342, 456, 507, 762
Tru9I TTAA 5 cut(s) 201, 342, 456, 507, 762
TscAI CASTG 3 cut(s) 280, 401, 576
TseFI GTSAC 2 cut(s) 155, 571
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 2 cut(s) 155, 571
TspDTI ATGAA 5 cut(s) 113, 163, 327, 601, 740
TspRI CASTG 3 cut(s) 280, 401, 576
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 3 cut(s) 170, 577, 771
XceI RCATGY 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 2 cut(s) 93, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.