Rmu_sc0000952.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000952.1
OG0000429
Physical Location & Seq
Reverse (-)
258 .. 1465
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000952.1_g000001.1.cds

Sequence Viewer

Length: 558 bp
atggagaagcttgttccaaactggtacagtgctgctcaacccttgcctgagacttgcatattcccacctgatgcaagaccagggaagtttagcattgctccttcaaggtccgacattccagtgattgatataggatatatcacaagagagcatgttagcaaatgtttcatcgacgtgaaggaagtggctttgaatattttgaagctgaccggtaaaggactagggataggatcagagtatttcagtgatgaacttagcagagagaccgacgtctttgttaataactatccaccttgtccaggcccaagtttgacactaggaataactaaacactctgacccacagctcatcacaattttacatcaaggggatgtcagtggccttcaagttttcaaggatggggaatggattggactggaacctacttcaaatggactggtggttaacataggctatcaattacggatcattatccgatatgaagagtttcctgccaactactttaggaagcaggggaaaaccgaagttgtgcttgaaccctttgaaatcgaatgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

185

Amino Acids

20.65

Weight (kDa)

4.99

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AclWI GGATC 2 cut(s) 238, 473
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 299
AgeI ACCGGT 1 cut(s) 209
AgsI TTSAA 8 cut(s) 105, 193, 202, 386, 394, 429, 536, 545
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 2 cut(s) 79, 298
AluBI AGCT 3 cut(s) 10, 205, 346
AluI AGCT 3 cut(s) 10, 205, 346
Alw26I GTCTC 2 cut(s) 44, 257
AlwI GGATC 2 cut(s) 238, 473
AoxI GGCC 2 cut(s) 301, 379
ApeKI GCWGC 1 cut(s) 32
AsiGI ACCGGT 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 108, 302
AvaII GGWCC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 392
BciT130I CCWGG 2 cut(s) 81, 300
BcoDI GTCTC 2 cut(s) 44, 257
BfaI CTAG 2 cut(s) 221, 317
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 81, 300
Bme18I GGWCC 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 108, 302
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 2 cut(s) 81, 300
BmsI GCATC 1 cut(s) 61
BoxI GACNNNNGTC 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 4 cut(s) 26, 119, 420, 441
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 470
BseBI CCWGG 2 cut(s) 81, 300
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 2 cut(s) 376, 403
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 4 cut(s) 26, 119, 420, 441
BseXI GCAGC 1 cut(s) 19
BshFI GGCC 2 cut(s) 303, 381
BshTI ACCGGT 1 cut(s) 209
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 44, 257
BsnI GGCC 2 cut(s) 303, 381
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 2 cut(s) 230, 465
BspANI GGCC 2 cut(s) 303, 381
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 2 cut(s) 238, 473
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 4 cut(s) 26, 119, 420, 441
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 2 cut(s) 230, 465
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 81, 300
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 48, 254
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 376, 403
BstKTI GATC 2 cut(s) 233, 468
BstMAI GTCTC 2 cut(s) 44, 257
BstMBI GATC 2 cut(s) 230, 465
BstNI CCWGG 2 cut(s) 81, 300
BstNSI RCATGY 1 cut(s) 155
BstPAI GACNNNNGTC 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 79, 298
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 303, 381
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 376, 403
BtsIMutI CAGTG 4 cut(s) 34, 126, 250, 382
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 108, 302
Csp6I GTAC 1 cut(s) 25
CspAI ACCGGT 1 cut(s) 209
CviAII CATG 1 cut(s) 152
CviJI RGCY 7 cut(s) 10, 188, 205, 303, 346, 381, 453
CviKI_1 RGCY 7 cut(s) 10, 188, 205, 303, 346, 381, 453
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 48, 254
DpnI GATC 2 cut(s) 232, 467
DpnII GATC 2 cut(s) 230, 465
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRII CCWGG 2 cut(s) 79, 298
FaeI CATG 1 cut(s) 155
FaiI YATR 6 cut(s) 59, 131, 138, 153, 449, 480
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 383, 410
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 221, 317
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 303, 381
HapII CCGG 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 8
HpaI GTTAAC 1 cut(s) 445
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 4 cut(s) 112, 235, 337, 476
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 2 cut(s) 176, 272
HpyAV CCTTC 3 cut(s) 111, 172, 392
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 174, 270
HpyCH4V TGCA 2 cut(s) 57, 74
HpyF3I CTNAG 2 cut(s) 48, 254
HpySE526I ACGT 2 cut(s) 174, 270
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 2 cut(s) 230, 465
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 221, 317
MaeII ACGT 2 cut(s) 174, 270
MalI GATC 2 cut(s) 232, 467
MboI GATC 2 cut(s) 230, 465
MboII GAAGA 1 cut(s) 494
MluCI AATT 2 cut(s) 354, 458
MmeI TCCRAC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 2 cut(s) 279, 444
MslI CAYNNNNRTG 2 cut(s) 119, 173
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 81, 300
MvaI CCWGG 2 cut(s) 81, 300
NdeII GATC 2 cut(s) 230, 465
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 420
NspI RCATGY 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 486
PinAI ACCGGT 1 cut(s) 209
PkrI GCNGC 1 cut(s) 34
PshAI GACNNNNGTC 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 79, 298
PspGI CCWGG 2 cut(s) 79, 298
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 2 cut(s) 108, 302
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 2 cut(s) 119, 173
SaqAI TTAA 2 cut(s) 279, 444
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 230, 465
Sau96I GGNCC 2 cut(s) 108, 302
ScrFI CCNGG 2 cut(s) 81, 300
SetI ASST 9 cut(s) 12, 70, 110, 177, 207, 273, 295, 348, 424
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 119, 173
Sse9I AATT 2 cut(s) 354, 458
SspI AATATT 1 cut(s) 196
SspMI CTAG 2 cut(s) 221, 317
StyD4I CCNGG 2 cut(s) 79, 298
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 2 cut(s) 177, 273
TaqI TCGA 2 cut(s) 171, 549
TaqII GACCGA 1 cut(s) 281
TasI AATT 2 cut(s) 354, 458
Tru1I TTAA 2 cut(s) 279, 444
Tru9I TTAA 2 cut(s) 279, 444
TscAI CASTG 4 cut(s) 34, 126, 250, 382
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 157, 264, 495
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 4 cut(s) 34, 126, 250, 382
VpaK11BI GGWCC 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 297
XceI RCATGY 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 2 cut(s) 221, 317
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.