Rh6AG308300

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
50620630 .. 50620932
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG308300.1

Sequence Viewer

Length: 303 bp
ATGTTTGACAAAATGTCTGAGAAGCTCATCTCAAACAGAAGTCGCTTGCAATTTGTACCTGAATCCTACATATTACCCCCAGGAACTAGGCCAGGCAATACACAGGTCTCTGTATTGGAGGTCATTCCAGTCATTGATTTTCAGCAACTTGGTACCAACAGTCGTCAGCTGACCAAGCAAATCATAGAGGCTTCCCAACAATTCGGCTTCTTCCAGGTACGAAACAATGTTCTTGATCCGGACACAATGTTGCGTTTGGATCTAATTGGTGAAGGGTTGGCATTTGAACCCGGATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.36

Weight (kDa)

4.96

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 42 - 85 3.1e-07 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 238
AclWI GGATC 2 cut(s) 230, 267
AfaI GTAC 3 cut(s) 57, 154, 219
AgsI TTSAA 1 cut(s) 287
AhdI GACNNNNNGTC 1 cut(s) 13
AjnI CCWGG 3 cut(s) 79, 91, 213
AluBI AGCT 2 cut(s) 25, 169
AluI AGCT 2 cut(s) 25, 169
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 2 cut(s) 230, 267
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 1 cut(s) 89
Asp718I GGTACC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 281
BanI GGYRCC 1 cut(s) 152
BciT130I CCWGG 3 cut(s) 81, 93, 215
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 87
Bme1390I CCNGG 4 cut(s) 81, 93, 215, 291
BmeRI GACNNNNNGTC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 4 cut(s) 81, 93, 215, 291
BpuMI CCSGG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 128
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 3 cut(s) 81, 93, 215
BseDI CCNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 128
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 2 cut(s) 239, 291
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 91
Bso31I GGTCTC 1 cut(s) 112
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 235, 259
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 10
BspEI TCCGGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 2 cut(s) 230, 267
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 2 cut(s) 235, 259
Bst2UI CCWGG 3 cut(s) 81, 93, 215
Bst4CI ACNGT 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 2 cut(s) 238, 262
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 235, 259
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 3 cut(s) 81, 93, 215
BstSCI CCNGG 4 cut(s) 79, 91, 213, 289
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 56, 153, 218
CviJI RGCY 5 cut(s) 25, 91, 169, 191, 207
CviKI_1 RGCY 5 cut(s) 25, 91, 169, 191, 207
CviQI GTAC 3 cut(s) 56, 153, 218
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 237, 261
DpnII GATC 2 cut(s) 235, 259
DriI GACNNNNNGTC 1 cut(s) 13
Eam1105I GACNNNNNGTC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 79, 91, 213
FaiI YATR 2 cut(s) 71, 185
FspBI CTAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 91
HapII CCGG 2 cut(s) 239, 291
HinfI GANTC 1 cut(s) 62
HpaII CCGG 2 cut(s) 239, 291
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 19, 302
Hpy188III TCNNGA 2 cut(s) 233, 239
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 18
Kpn2I TCCGGA 1 cut(s) 238
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 2 cut(s) 235, 259
MaeI CTAG 1 cut(s) 87
MalI GATC 2 cut(s) 237, 261
MboI GATC 2 cut(s) 235, 259
MboII GAAGA 1 cut(s) 202
MflI RGATCY 1 cut(s) 259
MluCI AATT 3 cut(s) 50, 200, 264
MnlI CCTC 2 cut(s) 112, 181
MroI TCCGGA 1 cut(s) 238
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 2 cut(s) 239, 291
MspR9I CCNGG 4 cut(s) 81, 93, 215, 291
MvaI CCWGG 3 cut(s) 81, 93, 215
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 291
NdeII GATC 2 cut(s) 235, 259
NlaIV GGNNCC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 79, 91, 213
PspGI CCWGG 3 cut(s) 79, 91, 213
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 3 cut(s) 57, 154, 219
RsaNI GTAC 3 cut(s) 56, 153, 218
Sau3AI GATC 2 cut(s) 235, 259
ScrFI CCNGG 4 cut(s) 81, 93, 215, 291
SetI ASST 6 cut(s) 27, 61, 108, 123, 171, 219
Sse9I AATT 3 cut(s) 50, 200, 264
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 79, 91, 213, 289
TaaI ACNGT 1 cut(s) 161
TasI AATT 3 cut(s) 50, 200, 264
TfiI GAWTC 1 cut(s) 62
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.