RLG00000012416

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000429
Physical Location & Seq
Reverse (-)
18589352 .. 18590718
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012416

Sequence Viewer

Length: 1032 bp
ATGGAGAAGCTTGTTCCAAACTGGTACAGTGCTGCTCAACCCTTGCCTGAGACATACATATTCCCACCTGATGCGAGACCAGGGAAGTTTAGCGTTGCTCCTTCAATATCCAACGACATTCCAGTGATTGATCTAGGATCACAGAGTCATGATCGAGCTCTTGTCATCCAGCAAATACTTGAGGCTAGCCAGGAATTCGGTTTCTTTCAGGTAATCAACCATGGCATACCAGAAGCTTTAATGAATGACGCAATGGATGTGTTCAAGGAGTTCTTTGAGTTGCCTCTAGAGGAAAAGAGGGCAAGCATCTACTCTGATGACCCCAACAAAGTCTGCAAGCTCGTACATAGCAGTGTTAATTATGATTGGGAGGAAGTTCATCTTTGGCGCGATTTCCTCCGACACCCTTGTGAACCTTTAGAAATATTCATGCCAATTTGGCCTCGGAAACCGATTAAATATCGAGAGCATGTTAGCAAATGTTTCACCCAAGTGAAGAAAGTGGCTTTGGACATTTTGGAGTTGATCGGTGAAGGACTTGGGATAGGATCAGAGTATTTCAATGATGAACTTAGCAAAGAGACTGATATCTTTGTTAATCACTATCCACCTTGTCCTGACCCAAGTTTGACACTAGGAATAACTAAACACTCTGACCCACAGCTCATCACAATTTTACTTCAAGGGGATGTCAGTGGCCTTCAAGTTTTCAAGGATGGGGAATGGATTGGAGTGGAACCTATTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTAGTAATGGAAAGCTCAAGTGTGCTGAACATCGAGTGGTGACGAATTCAAGTACTGTTCGGACGACGATTGGATTTTTCATTACACCCTCCCCTGACTGCTATATAGAACCTGCAGCAGCTCTTATTAATGCAAGCAATCCCCGACTCTATAAAGGCTTCCGATATGAAGAGTTTCGTGCCAACTACTTTAGGAAGCAGGGGAAAACCGAAGTTGTGCTTGAACCCTTTAAAATCGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

344

Amino Acids

39.0

Weight (kDa)

5.29

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 40 - 141 3.6e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 197 - 292 3.1e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 907
AccII CGCG 1 cut(s) 390
AclWI GGATC 3 cut(s) 145, 556, 791
AcsI RAATTY 2 cut(s) 194, 832
AfaI GTAC 3 cut(s) 26, 345, 841
AgsI TTSAA 9 cut(s) 105, 265, 562, 683, 704, 712, 747, 837, 1010
AjnI CCWGG 2 cut(s) 79, 189
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AleI CACNNNNGTG 2 cut(s) 408, 491
AluBI AGCT 7 cut(s) 10, 158, 236, 340, 664, 802, 908
AluI AGCT 7 cut(s) 10, 158, 236, 340, 664, 802, 908
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 3 cut(s) 44, 70, 575
AlwI GGATC 3 cut(s) 145, 556, 791
AoxI GGCC 2 cut(s) 440, 697
ApeKI GCWGC 3 cut(s) 32, 902, 905
ApoI RAATTY 2 cut(s) 194, 832
AseI ATTAAT 1 cut(s) 915
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 1 cut(s) 390
AsuHPI GGTGA 3 cut(s) 478, 542, 838
AsuNHI GCTAGC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 3 cut(s) 19, 914, 917
BccI CCATC 1 cut(s) 710
BciT130I CCWGG 2 cut(s) 81, 191
BcoDI GTCTC 3 cut(s) 44, 70, 575
BfaI CTAG 4 cut(s) 134, 186, 287, 635
BfmI CTRYAG 1 cut(s) 900
BfuAI ACCTGC 1 cut(s) 907
BglI GCCNNNNNGGC 1 cut(s) 439
BisI GCNGC 3 cut(s) 33, 903, 906
BlsI GCNGC 3 cut(s) 34, 904, 907
BmcAI AGTACT 1 cut(s) 841
Bme1390I CCNGG 2 cut(s) 81, 191
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 2 cut(s) 81, 191
BmsI GCATC 2 cut(s) 61, 315
BmtI GCTAGC 1 cut(s) 189
BpuEI CTTGAG 2 cut(s) 200, 788
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 3 cut(s) 80, 220, 443
Bse1I ACTGG 3 cut(s) 26, 122, 759
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 2 cut(s) 81, 191
BseDI CCNNGG 3 cut(s) 80, 220, 443
BseGI GGATG 4 cut(s) 165, 262, 694, 721
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 3 cut(s) 26, 122, 759
BseXI GCAGC 3 cut(s) 19, 914, 917
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 2 cut(s) 442, 699
BsiHKAI GWGCWC 1 cut(s) 160
BsmAI GTCTC 3 cut(s) 44, 70, 575
BsnI GGCC 2 cut(s) 442, 699
Bso31I GGTCTC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 6 cut(s) 130, 137, 151, 525, 548, 783
Bsp19I CCATGG 1 cut(s) 220
BspANI GGCC 2 cut(s) 442, 699
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 738
BspMAI CTGCAG 1 cut(s) 904
BspMI ACCTGC 1 cut(s) 907
BspOI GCTAGC 1 cut(s) 189
BspPI GGATC 3 cut(s) 145, 556, 791
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 3 cut(s) 26, 122, 759
BssECI CCNNGG 3 cut(s) 80, 220, 443
BssMI GATC 6 cut(s) 130, 137, 151, 525, 548, 783
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 81, 191
Bst4CI ACNGT 2 cut(s) 29, 844
Bst6I CTCTTC 1 cut(s) 951
BstC8I GCNNGC 4 cut(s) 187, 304, 338, 922
BstDEI CTNAG 3 cut(s) 48, 572, 1029
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 4 cut(s) 165, 262, 694, 721
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 6 cut(s) 133, 140, 154, 528, 551, 786
BstMAI GTCTC 3 cut(s) 44, 70, 575
BstMBI GATC 6 cut(s) 130, 137, 151, 525, 548, 783
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 2 cut(s) 81, 191
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 79, 189
BstSFI CTRYAG 1 cut(s) 900
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 19, 914, 917
BsuRI GGCC 2 cut(s) 442, 699
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 4 cut(s) 165, 262, 694, 721
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 4 cut(s) 34, 129, 358, 700
BveI ACCTGC 1 cut(s) 907
Cac8I GCNNGC 4 cut(s) 187, 304, 338, 922
CciI TCATGA 1 cut(s) 148
CfoI GCGC 1 cut(s) 390
CseI GACGC 1 cut(s) 257
Csp6I GTAC 3 cut(s) 25, 344, 840
CviAII CATG 4 cut(s) 149, 221, 430, 470
CviQI GTAC 3 cut(s) 25, 344, 840
DdeI CTNAG 3 cut(s) 48, 572, 1029
DpnI GATC 6 cut(s) 132, 139, 153, 527, 550, 785
DpnII GATC 6 cut(s) 130, 137, 151, 525, 548, 783
DraI TTTAAA 1 cut(s) 1018
Eam1104I CTCTTC 1 cut(s) 951
EarI CTCTTC 1 cut(s) 951
Ecl136II GAGCTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 70
Eco32I GATATC 1 cut(s) 589
Eco53kI GAGCTC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 158
EcoRI GAATTC 2 cut(s) 194, 832
EcoRII CCWGG 2 cut(s) 79, 189
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 4 cut(s) 152, 224, 433, 473
FalI AAGNNNNNCTT 6 cut(s) 257, 289, 366, 398, 990, 1022
FatI CATG 4 cut(s) 148, 220, 429, 469
Fnu4HI GCNGC 3 cut(s) 33, 903, 906
FokI GGATG 4 cut(s) 152, 269, 701, 728
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 33, 903, 906
FspBI CTAG 4 cut(s) 134, 186, 287, 635
GlaI GCGC 1 cut(s) 389
GluI GCNGC 3 cut(s) 33, 903, 906
HaeIII GGCC 2 cut(s) 442, 699
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 390
Hin1II CATG 4 cut(s) 152, 224, 433, 473
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 2 cut(s) 8, 234
HinfI GANTC 3 cut(s) 145, 933, 1025
HpaI GTTAAC 1 cut(s) 763
HphI GGTGA 3 cut(s) 478, 542, 838
Hpy166II GTNNAC 2 cut(s) 413, 763
Hpy188I TCNGA 7 cut(s) 316, 401, 447, 553, 655, 849, 950
Hpy188III TCNNGA 4 cut(s) 149, 287, 464, 617
Hpy8I GTNNAC 2 cut(s) 413, 763
Hpy99I CGWCG 1 cut(s) 856
HpyAV CCTTC 3 cut(s) 111, 527, 710
HpyCH4III ACNGT 2 cut(s) 29, 844
HpyCH4V TGCA 3 cut(s) 336, 902, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 3 cut(s) 48, 572, 1029
Hsp92II CATG 4 cut(s) 152, 224, 433, 473
HspAI GCGC 1 cut(s) 388
KspAI GTTAAC 1 cut(s) 763
Kzo9I GATC 6 cut(s) 130, 137, 151, 525, 548, 783
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 19, 914, 917
LweI GCATC 2 cut(s) 61, 315
MaeI CTAG 4 cut(s) 134, 186, 287, 635
MaeIII GTNAC 1 cut(s) 826
MalI GATC 6 cut(s) 132, 139, 153, 527, 550, 785
MboI GATC 6 cut(s) 130, 137, 151, 525, 548, 783
MboII GAAGA 2 cut(s) 508, 968
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 6 cut(s) 194, 358, 435, 672, 776, 832
MlyI GAGTC 2 cut(s) 154, 927
MmeI TCCRAC 2 cut(s) 135, 424
MnlI CCTC 8 cut(s) 175, 283, 291, 294, 364, 407, 453, 886
MroXI GAANNNNTTC 1 cut(s) 960
MseI TTAA 7 cut(s) 239, 357, 456, 597, 762, 915, 1017
MslI CAYNNNNRTG 4 cut(s) 122, 351, 408, 491
MspR9I CCNGG 2 cut(s) 81, 191
MvaI CCWGG 2 cut(s) 81, 191
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 439
NcoI CCATGG 1 cut(s) 220
NdeII GATC 6 cut(s) 130, 137, 151, 525, 548, 783
NheI GCTAGC 1 cut(s) 185
NlaIII CATG 4 cut(s) 152, 224, 433, 473
NlaIV GGNNCC 1 cut(s) 738
NmuCI GTSAC 1 cut(s) 826
NspI RCATGY 1 cut(s) 473
OliI CACNNNNGTG 2 cut(s) 408, 491
PagI TCATGA 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 1 cut(s) 1025
PkrI GCNGC 3 cut(s) 34, 904, 907
PleI GAGTC 2 cut(s) 153, 927
PpsI GAGTC 2 cut(s) 153, 927
PshBI ATTAAT 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 79, 189
PspGI CCWGG 2 cut(s) 79, 189
PspN4I GGNNCC 1 cut(s) 738
PstI CTGCAG 1 cut(s) 904
RsaI GTAC 3 cut(s) 26, 345, 841
RsaNI GTAC 3 cut(s) 25, 344, 840
RseI CAYNNNNRTG 4 cut(s) 122, 351, 408, 491
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 7 cut(s) 239, 357, 456, 597, 762, 915, 1017
SatI GCNGC 3 cut(s) 33, 903, 906
Sau3AI GATC 6 cut(s) 130, 137, 151, 525, 548, 783
ScaI AGTACT 1 cut(s) 841
SchI GAGTC 2 cut(s) 154, 927
ScrFI CCNGG 2 cut(s) 81, 191
SduI GDGCHC 1 cut(s) 160
SfaNI GCATC 2 cut(s) 61, 315
SfcI CTRYAG 1 cut(s) 900
SmiMI CAYNNNNRTG 4 cut(s) 122, 351, 408, 491
SmlI CTYRAG 2 cut(s) 179, 803
SmoI CTYRAG 2 cut(s) 179, 803
Sse9I AATT 6 cut(s) 194, 358, 435, 672, 776, 832
SspI AATATT 1 cut(s) 426
SspMI CTAG 4 cut(s) 134, 186, 287, 635
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 79, 189
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 29, 844
TaqI TCGA 4 cut(s) 154, 463, 820, 1023
TasI AATT 6 cut(s) 194, 358, 435, 672, 776, 832
TatI WGTACW 1 cut(s) 839
TfiI GAWTC 1 cut(s) 1025
Tru1I TTAA 7 cut(s) 239, 357, 456, 597, 762, 915, 1017
Tru9I TTAA 7 cut(s) 239, 357, 456, 597, 762, 915, 1017
TscAI CASTG 4 cut(s) 34, 129, 358, 700
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 3 cut(s) 32, 902, 905
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 6 cut(s) 257, 368, 418, 582, 856, 969
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 4 cut(s) 34, 129, 358, 700
VspI ATTAAT 1 cut(s) 915
XapI RAATTY 2 cut(s) 194, 832
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 4 cut(s) 134, 186, 287, 635
ZrmI AGTACT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.