Prupe.8G224200_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000429
Physical Location & Seq
Forward (+)
20216270 .. 20217987
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G224200.1

Sequence Viewer

Length: 1050 bp
ATGTTCATTGGCATTGGAGCAATGGAGAAGCTCGTTTCTAGCTGGTACAACGTTCAACCCTTGCCGGACAATTACATATTCCCACCAGATGCAAGACCCGGGAAGCTAGACGTTCCTTTATGCAACAACATTCCAGTGATTGATATGGGTGGAGCTGGAGCAGAAGCTCATGACAGAACCTCTATAATTCAGCAAATGCTGAACGCGAGCGAAGAATTTGGATTTTTTCAGGTAATCAACCATGGCATACCAGAAAATTTGCTGAAAGACACAATGAGGGTGTTCAAGGAGTTTTTTGAGTTACCTTTAGAGGATAAGGCAAGCCTCTACTCTGAGGACCCCAACAAAAACTGCAGGCTCTTCACCAGCAGTGGCAATTATGACTGGGAAGAAGCTCATTTTTGGCGTGATATCTTAAGACACTGTTGTCATCCTTTGGAGCAGTGCATCCAATTTTGGCCTCAAAAGCCAATTACATATAGAGAGCATGTTGGTGCATGTTCCACCCAAGTGAGGGAAGTGGCTTTGAACATTTTGCAGCTAATCAGTGAAGGACTTGGGCTAGAACCTGGGTATTTCAGGGATGAACTTAGCCAAGTGTCTTTACTCTCAGTCAATTATTACCCACCTTGTCCAGACCCAAGTTTGACATTAGGGGTACCTAAACACTGTGACCCAAACCTCATAACCATTTTACTTCAAGGGGATGTAAATGGGCTTCAAGTTTTCAAGGATGGGGAATGGATTGGTGTGGAGCCTCTTCCCAGTGCACTTGTGGTCAACATAGGCTATCAGTTACAGATTATCAGTAATGGGAAGCTGAAATGTGCCGAACATCGGGCCGTTACGAATTCCAGAAATGCTAGGACATCTACTGCATTTTTCTTTACGCCTTCCCCTGATTGTCTCATAAAACCTGCAGGAGCTCTTATTAACGCAAGCAATCCCCAACGCTATAAAGCCTTTCAGTACAAAGAGTTCATTACCAACTATGCTATGAAGCAGGGTAAAACCGACATTGTACTTGAACCATTCAAGCTCCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

350

Amino Acids

39.31

Weight (kDa)

5.43

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 925
Acc65I GGTACC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 658
AccII CGCG 1 cut(s) 206
AclI AACGTT 1 cut(s) 51
AcsI RAATTY 3 cut(s) 215, 256, 850
AfaI GTAC 4 cut(s) 47, 660, 971, 1023
AfiI CCNNNNNNNGG 3 cut(s) 513, 514, 837
AflII CTTAAG 1 cut(s) 415
AgsI TTSAA 8 cut(s) 56, 286, 529, 701, 722, 730, 1028, 1036
AjnI CCWGG 1 cut(s) 568
AleI CACNNNNGTG 1 cut(s) 509
Alw21I GWGCWC 2 cut(s) 772, 928
Alw26I GTCTC 1 cut(s) 911
Alw44I GTGCAC 1 cut(s) 768
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 2 cut(s) 458, 840
ApaLI GTGCAC 1 cut(s) 768
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 3 cut(s) 215, 256, 850
Asp718I GGTACC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 337, 840
AsuC2I CCSGG 2 cut(s) 99, 100
AsuHPI GGTGA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 772
BanI GGYRCC 1 cut(s) 658
BanII GRGCYC 1 cut(s) 928
BarI GAAGNNNNNNTAC 2 cut(s) 702, 734
Bbv12I GWGCWC 2 cut(s) 772, 928
BbvI GCAGC 1 cut(s) 550
BccI CCATC 1 cut(s) 728
BceAI ACGGC 1 cut(s) 827
BciT130I CCWGG 1 cut(s) 570
BcnI CCSGG 2 cut(s) 99, 100
BcoDI GTCTC 1 cut(s) 911
BfaI CTAG 4 cut(s) 39, 107, 563, 864
BfmI CTRYAG 2 cut(s) 352, 918
BfrI CTTAAG 1 cut(s) 415
BfuAI ACCTGC 1 cut(s) 925
BisI GCNGC 1 cut(s) 539
BlsI GCNGC 1 cut(s) 540
Bme1390I CCNGG 3 cut(s) 99, 100, 570
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 337, 840
BmiI GGNNCC 3 cut(s) 339, 660, 756
BmrFI CCNGG 3 cut(s) 99, 100, 570
BmrI ACTGGG 2 cut(s) 394, 759
BmsI GCATC 2 cut(s) 79, 456
BmuI ACTGGG 2 cut(s) 394, 759
BpmI CTGGAG 1 cut(s) 177
BpuMI CCSGG 2 cut(s) 99, 100
BsaJI CCNNGG 3 cut(s) 98, 241, 569
Bsc4I CCNNNNNNNGG 3 cut(s) 513, 514, 837
Bse1I ACTGG 3 cut(s) 134, 389, 765
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 98, 241, 569
BseGI GGATG 5 cut(s) 430, 447, 589, 712, 739
BseLI CCNNNNNNNGG 3 cut(s) 513, 514, 837
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 324, 624
BseNI ACTGG 3 cut(s) 134, 389, 765
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 1 cut(s) 550
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 460, 842
BshNI GGYRCC 1 cut(s) 658
BsiHKAI GWGCWC 2 cut(s) 772, 928
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 65, 99
BslI CCNNNNNNNGG 3 cut(s) 513, 514, 837
BsmAI GTCTC 1 cut(s) 911
BsnI GGCC 2 cut(s) 460, 842
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 772, 928
Bsp19I CCATGG 1 cut(s) 241
BspANI GGCC 2 cut(s) 460, 842
BspCNI CTCAG 2 cut(s) 325, 623
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 339, 660, 756
BspMAI CTGCAG 2 cut(s) 356, 922
BspMI ACCTGC 1 cut(s) 925
BspQI GCTCTTC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 658
BspTI CTTAAG 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 3 cut(s) 134, 389, 765
BssECI CCNNGG 3 cut(s) 98, 241, 569
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 425, 671
Bst6I CTCTTC 2 cut(s) 365, 765
BstAFI CTTAAG 1 cut(s) 415
BstC8I GCNNGC 4 cut(s) 208, 322, 356, 940
BstDEI CTNAG 4 cut(s) 333, 590, 610, 1047
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 5 cut(s) 430, 447, 589, 712, 739
BstFNI CGCG 1 cut(s) 206
BstMAI GTCTC 1 cut(s) 911
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 2 cut(s) 491, 501
BstSCI CCNGG 3 cut(s) 97, 98, 568
BstSFI CTRYAG 2 cut(s) 352, 918
BstSLI GKGCMC 1 cut(s) 772
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 550
BsuRI GGCC 2 cut(s) 460, 842
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 5 cut(s) 430, 447, 589, 712, 739
BtsI GCAGTG 2 cut(s) 376, 449
BtsIMutI CAGTG 7 cut(s) 141, 376, 421, 449, 553, 667, 772
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 4 cut(s) 208, 322, 356, 940
CciI TCATGA 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 337, 840
Cfr9I CCCGGG 1 cut(s) 98
Csp6I GTAC 4 cut(s) 46, 659, 970, 1022
CviAII CATG 4 cut(s) 170, 242, 488, 498
CviQI GTAC 4 cut(s) 46, 659, 970, 1022
DdeI CTNAG 4 cut(s) 333, 590, 610, 1047
DrdI GACNNNNNNGTC 1 cut(s) 426
DseDI GACNNNNNNGTC 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 365, 765
EarI CTCTTC 2 cut(s) 365, 765
Ecl136II GAGCTC 1 cut(s) 926
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 928
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 926
Eco88I CYCGRG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 926
EcoO109I RGGNCCY 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 1 cut(s) 568
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 4 cut(s) 173, 245, 491, 501
FatI CATG 4 cut(s) 169, 241, 487, 497
Fnu4HI GCNGC 1 cut(s) 539
FokI GGATG 5 cut(s) 417, 434, 596, 719, 746
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 1 cut(s) 539
FspBI CTAG 4 cut(s) 39, 107, 563, 864
GluI GCNGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 2 cut(s) 460, 842
HapII CCGG 2 cut(s) 65, 99
Hin1II CATG 4 cut(s) 173, 245, 491, 501
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 1 cut(s) 1044
HpaII CCGG 2 cut(s) 65, 99
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 770, 781
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 3 cut(s) 170, 635, 855
Hpy8I GTNNAC 2 cut(s) 770, 781
HpyAV CCTTC 2 cut(s) 545, 903
HpyCH4III ACNGT 2 cut(s) 425, 671
HpyCH4IV ACGT 2 cut(s) 51, 111
HpyCH4V TGCA 9 cut(s) 92, 123, 354, 447, 497, 538, 770, 878, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 4 cut(s) 333, 590, 610, 1047
HpySE526I ACGT 2 cut(s) 51, 111
Hsp92II CATG 4 cut(s) 173, 245, 491, 501
KpnI GGTACC 1 cut(s) 662
LguI GCTCTTC 1 cut(s) 365
LmnI GCTCC 7 cut(s) 17, 152, 158, 439, 754, 923, 1044
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 2 cut(s) 79, 456
MaeI CTAG 4 cut(s) 39, 107, 563, 864
MaeII ACGT 2 cut(s) 51, 111
MaeIII GTNAC 4 cut(s) 300, 671, 795, 844
MboII GAAGA 4 cut(s) 224, 352, 401, 752
MhlI GDGCHC 2 cut(s) 772, 928
MluCI AATT 9 cut(s) 70, 186, 215, 256, 376, 452, 471, 616, 850
MnlI CCTC 9 cut(s) 190, 270, 304, 328, 335, 471, 507, 692, 768
MseI TTAA 2 cut(s) 416, 933
MslI CAYNNNNRTG 3 cut(s) 134, 492, 509
MspCI CTTAAG 1 cut(s) 415
MspI CCGG 2 cut(s) 65, 99
MspR9I CCNGG 3 cut(s) 99, 100, 570
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 466
NciI CCSGG 2 cut(s) 99, 100
NcoI CCATGG 1 cut(s) 241
NlaIII CATG 4 cut(s) 173, 245, 491, 501
NlaIV GGNNCC 3 cut(s) 339, 660, 756
NmuCI GTSAC 1 cut(s) 671
NspI RCATGY 2 cut(s) 491, 501
OliI CACNNNNGTG 1 cut(s) 509
PagI TCATGA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 540
PpuMI RGGWCCY 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 928
Psp1406I AACGTT 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 339, 660, 756
PspPI GGNCC 2 cut(s) 337, 840
PspPPI RGGWCCY 1 cut(s) 337
PsrI GAACNNNNNNTAC 2 cut(s) 962, 994
PstI CTGCAG 2 cut(s) 356, 922
RsaI GTAC 4 cut(s) 47, 660, 971, 1023
RsaNI GTAC 4 cut(s) 46, 659, 970, 1022
RseI CAYNNNNRTG 3 cut(s) 134, 492, 509
SacI GAGCTC 1 cut(s) 928
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 416, 933
SatI GCNGC 1 cut(s) 539
Sau96I GGNCC 2 cut(s) 337, 840
SbfI CCTGCAGG 1 cut(s) 922
ScrFI CCNGG 3 cut(s) 99, 100, 570
SdaI CCTGCAGG 1 cut(s) 922
SduI GDGCHC 2 cut(s) 772, 928
SfaNI GCATC 2 cut(s) 79, 456
SfcI CTRYAG 2 cut(s) 352, 918
SinI GGWCC 1 cut(s) 337
SmaI CCCGGG 1 cut(s) 100
SmiMI CAYNNNNRTG 3 cut(s) 134, 492, 509
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
Sse8387I CCTGCAGG 1 cut(s) 922
Sse9I AATT 9 cut(s) 70, 186, 215, 256, 376, 452, 471, 616, 850
SspMI CTAG 4 cut(s) 39, 107, 563, 864
SstI GAGCTC 1 cut(s) 928
StyD4I CCNGG 3 cut(s) 97, 98, 568
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 425, 671
TaiI ACGT 2 cut(s) 54, 114
TasI AATT 9 cut(s) 70, 186, 215, 256, 376, 452, 471, 616, 850
TatI WGTACW 2 cut(s) 969, 1021
Tru1I TTAA 2 cut(s) 416, 933
Tru9I TTAA 2 cut(s) 416, 933
TscAI CASTG 7 cut(s) 141, 376, 428, 449, 553, 674, 772
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 1 cut(s) 538
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 3 cut(s) 600, 970, 1013
TspMI CCCGGG 1 cut(s) 98
TspRI CASTG 7 cut(s) 141, 376, 428, 449, 553, 674, 772
Vha464I CTTAAG 1 cut(s) 415
VneI GTGCAC 1 cut(s) 768
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 3 cut(s) 215, 256, 850
XceI RCATGY 2 cut(s) 491, 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XmaI CCCGGG 1 cut(s) 98
XspI CTAG 4 cut(s) 39, 107, 563, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.