MD05G1200000.v1.1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000429
Physical Location & Seq
Forward (+)
32751292 .. 32751489
198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1200000.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGGAAATTATTCGGTGGAGGTGAGGAAACTGGGGCTGTGTCTTCTGGATCTAATTTGTGAAGGGTTAGGACTCGAAACTGGATTTTTTGACGGTGAACTGAGCCAAGTGCAGTTGATGGCTGCAAATTATTACCCACCATGTCCAGAGCCAAGTTTAACCTTGGGATTACCTAACACAGTGATATTAATCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

66

Amino Acids

7.02

Weight (kDa)

4.05

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 57
AlwI GGATC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 122
AseI ATTAAT 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 34, 107
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 112
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 36, 85
Bse8I GATNNNNATC 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 188
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 36, 85
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 131
Bsp143I GATC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 93
BspPI GGATC 1 cut(s) 57
BsrI ACTGG 2 cut(s) 36, 85
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 95, 181
BstDEI CTNAG 1 cut(s) 101
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 186
CviAII CATG 1 cut(s) 141
CviJI RGCY 4 cut(s) 37, 105, 122, 151
CviKI_1 RGCY 4 cut(s) 37, 105, 122, 151
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 144
FaiI YATR 2 cut(s) 142, 196
FatI CATG 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 144
HinfI GANTC 1 cut(s) 72
HphI GGTGA 2 cut(s) 34, 107
Hpy166II GTNNAC 1 cut(s) 98
Hpy188III TCNNGA 2 cut(s) 47, 146
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 95, 181
HpyCH4V TGCA 2 cut(s) 112, 125
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 1 cut(s) 144
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 4 cut(s) 17, 32, 66, 159
Lsp1109I GCAGC 1 cut(s) 109
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 49
MluCI AATT 3 cut(s) 7, 54, 127
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 2 cut(s) 13, 18
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 2 cut(s) 158, 188
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PshBI ATTAAT 1 cut(s) 188
PsuI RGATCY 1 cut(s) 49
SaqAI TTAA 2 cut(s) 158, 188
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 1 cut(s) 66
SetI ASST 3 cut(s) 24, 164, 175
SgeI CNNG 9 cut(s) 44, 59, 86, 93, 119, 153, 158, 165, 175
Sse9I AATT 3 cut(s) 7, 54, 127
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 95, 181
TaqI TCGA 1 cut(s) 75
TasI AATT 3 cut(s) 7, 54, 127
Tru1I TTAA 2 cut(s) 158, 188
Tru9I TTAA 2 cut(s) 158, 188
TscAI CASTG 1 cut(s) 186
TseI GCWGC 1 cut(s) 122
TspRI CASTG 1 cut(s) 186
VspI ATTAAT 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.