Rroxscaffold_3G00266420

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000429
Physical Location & Seq
Reverse (-)
59693221 .. 59694104
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266420.1

Sequence Viewer

Length: 639 bp
ATGTTGTCAAATTATCGAGTAACTAGATATACAATCTGTAATTATAGCAATCTTTATCTATGTTATTTCAGAGAGCATGTTAGCAAATGTTTCATCGACGTGAAGGAAGTGGCTTTGAATATTTTGGAGTTGATCGGTGAAGGACTAGGGATAGGATCAGAGTATTTCAGTGATGAACTTAGCAAAGAGACTGACGTCTTTGTTAATCACTATCCACCTTGTCCAGACCCAAGTTTGACACTAGGTATAACTAAACACTCTGACCCACAGCTCATCACAATTTTACATCAAGGGGATGTCAGTGGCCTTCAAGTTTTCAACGATGGGGAATGGATTGGAGTGGAACCTATTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTTGTAATGGAAAGCTCAAGTGTGATGAACATCAAGTAGTGACAAATTCAAGTACTGTTCGAACGACGTTTGGATTTTTCATCACACCCTCCCCTGATTGCTATATAGAACCTGCAGCAGCTCTTATTAATGCAAGCAATCCCCAACTCTATAAAGGCTTCCGATATGAAGAGTTTCGTGCCAACTACTTTAGGAAGCAGGGGAAAACCGAAGCTGTGCTTGAACCCTTTAAAATCGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

212

Amino Acids

23.98

Weight (kDa)

5.24

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 66 - 161 8.8e-27 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 514
AclWI GGATC 2 cut(s) 163, 398
AcsI RAATTY 1 cut(s) 439
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 448
AgsI TTSAA 6 cut(s) 118, 311, 319, 354, 444, 617
AjiI CACGTC 1 cut(s) 100
AluBI AGCT 4 cut(s) 271, 409, 515, 608
AluI AGCT 4 cut(s) 271, 409, 515, 608
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 163, 398
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 509, 512
ApoI RAATTY 1 cut(s) 439
AseI ATTAAT 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 567
AsuHPI GGTGA 1 cut(s) 149
AsuII TTCGAA 1 cut(s) 454
BbvI GCAGC 2 cut(s) 521, 524
BccI CCATC 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 3 cut(s) 24, 146, 242
BfmI CTRYAG 1 cut(s) 507
BfuAI ACCTGC 1 cut(s) 514
BisI GCNGC 2 cut(s) 510, 513
BlsI GCNGC 2 cut(s) 511, 514
BmcAI AGTACT 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 345
BoxI GACNNNNGTC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 423
BseGI GGATG 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 423
BseNI ACTGG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 521, 524
BshFI GGCC 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 454
Bsp143I GATC 3 cut(s) 132, 155, 390
BspANI GGCC 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 345
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 2 cut(s) 163, 398
BspT104I TTCGAA 1 cut(s) 454
BsrI ACTGG 1 cut(s) 366
BssMI GATC 3 cut(s) 132, 155, 390
BssNI GRCGYC 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 2 cut(s) 179, 636
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 3 cut(s) 135, 158, 393
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 3 cut(s) 132, 155, 390
BstNSI RCATGY 1 cut(s) 80
BstPAI GACNNNNGTC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 521, 524
BsuRI GGCC 1 cut(s) 306
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 175, 307
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 529
Csp6I GTAC 1 cut(s) 447
CviAII CATG 1 cut(s) 77
CviJI RGCY 8 cut(s) 113, 271, 306, 378, 409, 515, 552, 608
CviKI_1 RGCY 8 cut(s) 113, 271, 306, 378, 409, 515, 552, 608
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 2 cut(s) 179, 636
DpnI GATC 3 cut(s) 134, 157, 392
DpnII GATC 3 cut(s) 132, 155, 390
DraI TTTAAA 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
FaeI CATG 1 cut(s) 80
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 510, 513
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 510, 513
FspBI CTAG 3 cut(s) 24, 146, 242
GluI GCNGC 2 cut(s) 510, 513
HaeIII GGCC 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 80
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 1 cut(s) 632
HpaI GTTAAC 1 cut(s) 370
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 4 cut(s) 71, 160, 262, 557
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 2 cut(s) 101, 463
HpyAV CCTTC 3 cut(s) 97, 134, 317
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 3 cut(s) 99, 195, 461
HpyCH4V TGCA 2 cut(s) 509, 527
HpyF3I CTNAG 2 cut(s) 179, 636
HpySE526I ACGT 3 cut(s) 99, 195, 461
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 80
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 3 cut(s) 132, 155, 390
LpnPI CCDG 5 cut(s) 237, 347, 501, 519, 578
Lsp1109I GCAGC 2 cut(s) 521, 524
MaeI CTAG 3 cut(s) 24, 146, 242
MaeII ACGT 3 cut(s) 99, 195, 461
MaeIII GTNAC 2 cut(s) 19, 433
MalI GATC 3 cut(s) 134, 157, 392
MboI GATC 3 cut(s) 132, 155, 390
MboII GAAGA 1 cut(s) 575
MluCI AATT 5 cut(s) 10, 40, 279, 383, 439
MnlI CCTC 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 4 cut(s) 204, 369, 522, 624
MslI CAYNNNNRTG 1 cut(s) 98
NdeII GATC 3 cut(s) 132, 155, 390
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 1 cut(s) 80
NspV TTCGAA 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 632
PkrI GCNGC 2 cut(s) 511, 514
PshAI GACNNNNGTC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 345
PstI CTGCAG 1 cut(s) 511
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 4 cut(s) 204, 369, 522, 624
SatI GCNGC 2 cut(s) 510, 513
Sau3AI GATC 3 cut(s) 132, 155, 390
ScaI AGTACT 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 5 cut(s) 10, 40, 279, 383, 439
SspI AATATT 1 cut(s) 121
SspMI CTAG 3 cut(s) 24, 146, 242
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 3 cut(s) 102, 198, 464
TaqI TCGA 4 cut(s) 16, 96, 454, 630
TasI AATT 5 cut(s) 10, 40, 279, 383, 439
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 4 cut(s) 204, 369, 522, 624
Tru9I TTAA 4 cut(s) 204, 369, 522, 624
TscAI CASTG 2 cut(s) 175, 307
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 509, 512
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 5 cut(s) 82, 189, 435, 463, 576
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 2 cut(s) 175, 307
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 3 cut(s) 24, 146, 242
ZraI GACGTC 1 cut(s) 196
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.