Rorug06G0196600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000429
Physical Location & Seq
Forward (+)
31688220 .. 31691330
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0196600.1

Sequence Viewer

Length: 2109 bp
ATGGCGGAGGATGCGGAGACCTTTGCGTTCCAGGCCGAGATCAACCAGCTTCTGAGTCTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTCCTTCGCGAACTCATCAGCAATTCCTCTGATGCTTTGGACAAAATTCGATTCGAGAGCCTTACGGACAAAAGCAAGCTTGATGCTCAACCGGAGCTTTTCATCAGGCTTGTGCCTGATAAGGTCAACAACACGCTCTCCATCATTGATAGTGGCATTGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGAACGATTGCAAGGTCCGGAACCAAGGAGTTTATGGAGGCCTTGCAGTCTGGGGTGTCTGATGTGAGCATGATTGGACAGTTTGGTGTGGGTTTCTATTCCGCTTATCTTGTTGCTGAGAAGGTCATTGTGACCACAAAACACAATGATGACGAACAATACATCTGGGAATCGCAAGCGGGTGGTTCCTTCACCGTCACTAGAGATGTAAATGGAGAGCAGCTAGGCAGGGGAACCAAGATCACTCTCTTCCTCAAGGAGGATCAGTTGGAATATCTAGAGGAGAGGAGGATCAAGGACCTTGTGAAGAAGCACTCTGAATTCATCAGCTATCCCATCTATCTTTGGACGGAGAAGACTACTGAGAAAGAGATTAGTGATGATGAGGAAGATGAGGAAGCCAAGAAGGAAGAGGAAGGAGAAGTTGAGGAAGTTAACGAGGACAAGGAGAAAGAATCAAAGAAGAAAAAGAAGATCAAGGAGGTTTCCCATGAGTGGGAGCTAATCAACAAGCAGAAACCTATCTGGCTGCGCAAGCCTGAGGAAATTACCAAGGATGAATATGCTGCATTCTACAAGAGCTTGACCAATGACTGGGAGGAACACCTTGCTGTCAAGCATTTCTCTGTTGAAGGACAGCTTGAATTCAAAGCCATTCTCTTTGTCCCAAAGAGAGCTCCGTTCGACCTGTTTGACACCAGGAAAAAGATGAATAACATTAAGCTCTATGTCAGGAGAGTGTTTATTATGGACAACTGTGAAGAGCTCATCCCAGAGTATCTTGGATTTGTTAAGGGTGTCGTGGACTCCGATGACTTGCCACTGAACATCTCTCGTGAGATGCTTCAACAGAACAAGATATTGAAGGTGATCAGGAAGAACCTTGTGAAGAAGTGCATTGAGATGTTCAATGAGATTGCTGAAAACAAAGAGGATTACACCAAGTTTTATGAGGCATTCTCCAAGAACTTGAAGTTGGGTATTCATGAAGACAGCCAGAACAGAGCCAAATTGGCTGACCTTCTCCGGTACCACTCCACCAAGAGTGGTGAGGACCTGACAAGCCTGAAGGACTATGTTACCAGAATGAAGGAGGGCCAAAAGGACATTTACTACATTACTGGTGAAAGCAAGAAGGCAGTGGAGAATTCTCCATTCTTGGAGCGCCTCAAGAAAAAGGGATATGAAGTGCTTTTCATGGTGGATGCGATCGATGAGTATGCTGTAGGTCAGTTGAAGGAGTATGATGGCAAGAAGTTGGTGTCTGCCACAAAGGAAGGATTGAAGCTTGATGATGAAACTGAGGAAGAGAAGCAGAAGAGAGAGGAGAAGAAGAAATCCTTTGAGAATCTTTGCAAGACAATCAAGGACATTTTGGGAGATAGGATTGAGAAGGTAGTAGTATCTGACAGAATTGTGGATTCGCCTTGCTGCTTGGTGACGGGTGAATATGGCTGGACTGCGAATATGGAGAGGATCATGAAGGCTCAGGCTCTCAGGGACAACAGCATGGGATCCTACATGTCGAGCAAGAAGACAATGGAAATCAATCCAGATAATGGAATCATGGAGGAGTTGAGGAAGAGGGCCGAAGCTGATAAGAATGACAAGTCTGTCAAGGACCTTGTGCTGCTGCTGTTCGAGACTGCCCTCTTGACTTCCGGATTCAGCTTGGATGATCCCAACACTTTTGCGGCAAGAATCAACAGGATGTTGAAGCTGGGCCTCAGCATTGATGAGGATGAGGCAGCTGGTGAAGATGCAGATATGCCTGCTTTGGAGGACGATGCTGCTGAAGAGAGCAAGATGGAGGAGGTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

702

Amino Acids

80.73

Weight (kDa)

4.94

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c PF02518 30 - 183 3.2e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3 PF13589 32 - 148 9.8e-08 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 186 - 697 1.1e-242 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1898
Acc16I TGCGCA 1 cut(s) 818
Acc65I GGTACC 1 cut(s) 1314
AccB1I GGYRCC 1 cut(s) 1314
AccB7I CCANNNNNTGG 2 cut(s) 879, 1844
AccI GTMKAC 1 cut(s) 2103
AccII CGCG 1 cut(s) 102
AccIII TCCGGA 2 cut(s) 302, 1946
AciI CCGC 5 cut(s) 5, 14, 387, 464, 1979
AclWI GGATC 6 cut(s) 555, 584, 1769, 1794, 1807, 1958
AcsI RAATTY 4 cut(s) 138, 605, 929, 1432
AcuI CTGAAG 2 cut(s) 1373, 2100
AfaI GTAC 1 cut(s) 1316
AfiI CCNNNNNNNGG 5 cut(s) 544, 780, 781, 879, 1844
AflIII ACRYGT 1 cut(s) 1806
AjnI CCWGG 2 cut(s) 30, 983
AjuI GAANNNNNNNTTGG 2 cut(s) 1244, 1276
Alw21I GWGCWC 2 cut(s) 964, 1053
Alw26I GTCTC 2 cut(s) 11, 1922
AlwI GGATC 6 cut(s) 555, 584, 1769, 1794, 1807, 1958
AlwNI CAGNNNCTG 1 cut(s) 52
Aor13HI TCCGGA 2 cut(s) 302, 1946
AoxI GGCC 5 cut(s) 33, 324, 1381, 1872, 2008
ApeKI GCWGC 8 cut(s) 505, 814, 851, 1716, 1915, 1918, 2033, 2075
ApoI RAATTY 4 cut(s) 138, 605, 929, 1432
Asp718I GGTACC 1 cut(s) 1314
AspLEI GCGC 2 cut(s) 819, 1452
AspS9I GGNCC 7 cut(s) 300, 583, 1339, 1381, 1872, 1906, 2008
AsuHPI GGTGA 8 cut(s) 286, 469, 1165, 1346, 1421, 1735, 1742, 2051
AvaII GGWCC 4 cut(s) 300, 583, 1339, 1906
AxyI CCTNAGG 1 cut(s) 825
BamHI GGATCC 1 cut(s) 1799
BanI GGYRCC 1 cut(s) 1314
BanII GRGCYC 2 cut(s) 964, 1053
BauI CACGAG 1 cut(s) 1119
BbsI GAAGAC 3 cut(s) 647, 1281, 1826
Bbv12I GWGCWC 2 cut(s) 964, 1053
BbvCI CCTCAGC 1 cut(s) 2012
BbvI GCAGC 8 cut(s) 517, 801, 838, 1703, 1902, 1905, 2045, 2062
BccI CCATC 4 cut(s) 242, 629, 1526, 2086
BcgI CGANNNNNNTGC 2 cut(s) 1487, 1521
BciT130I CCWGG 2 cut(s) 32, 985
BclI TGATCA 2 cut(s) 60, 1155
BcoDI GTCTC 2 cut(s) 11, 1922
BfaI CTAG 3 cut(s) 486, 509, 563
BfmI CTRYAG 2 cut(s) 76, 1509
BfoI RGCGCY 1 cut(s) 1453
BglI GCCNNNNNGGC 1 cut(s) 1298
BisI GCNGC 9 cut(s) 506, 815, 852, 1717, 1916, 1919, 1980, 2034, 2076
BlsI GCNGC 9 cut(s) 507, 816, 853, 1718, 1917, 1920, 1981, 2035, 2077
Bme1390I CCNGG 2 cut(s) 32, 985
Bme18I GGWCC 4 cut(s) 300, 583, 1339, 1906
BmgT120I GGNCC 7 cut(s) 300, 583, 1339, 1381, 1872, 1906, 2008
BmiI GGNNCC 5 cut(s) 307, 472, 520, 1316, 1801
BmrFI CCNGG 2 cut(s) 32, 985
BmrI ACTGGG 1 cut(s) 889
BmsI GCATC 6 cut(s) 115, 166, 1116, 1480, 2035, 2062
BmuI ACTGGG 1 cut(s) 889
BpiI GAAGAC 3 cut(s) 647, 1281, 1826
BplI GAGNNNNNCTC 2 cut(s) 1229, 1261
Bpu10I CCTNAGC 2 cut(s) 1773, 2012
BpuEI CTTGAG 2 cut(s) 524, 1439
Bsa29I ATCGAT 1 cut(s) 1497
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 309, 837
BsaWI WCCGGW 4 cut(s) 184, 302, 1311, 1946
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 536, 566
Bsc4I CCNNNNNNNGG 5 cut(s) 544, 780, 781, 879, 1844
Bse1I ACTGG 2 cut(s) 884, 1411
Bse21I CCTNAGG 1 cut(s) 825
BseAI TCCGGA 2 cut(s) 302, 1946
BseBI CCWGG 2 cut(s) 32, 985
BseCI ATCGAT 1 cut(s) 1497
BseDI CCNNGG 2 cut(s) 309, 837
BseGI GGATG 7 cut(s) 16, 847, 1053, 1495, 1966, 2001, 2032
BseLI CCNNNNNNNGG 5 cut(s) 544, 780, 781, 879, 1844
BseMII CTCAG 8 cut(s) 44, 393, 639, 816, 1578, 1787, 1795, 2026
BseNI ACTGG 2 cut(s) 884, 1411
BseRI GAGGAG 4 cut(s) 581, 586, 1625, 1871
BseXI GCAGC 8 cut(s) 517, 801, 838, 1703, 1902, 1905, 2045, 2062
BseYI CCCAGC 1 cut(s) 2005
Bsh1236I CGCG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 1497
BshFI GGCC 5 cut(s) 35, 326, 1383, 1874, 2010
BshNI GGYRCC 1 cut(s) 1314
BshVI ATCGAT 1 cut(s) 1497
BsiEI CGRYCG 1 cut(s) 1497
BsiHKAI GWGCWC 2 cut(s) 964, 1053
BsiSI CCGG 4 cut(s) 185, 303, 1312, 1947
BslFI GGGAC 2 cut(s) 935, 1799
BslI CCNNNNNNNGG 5 cut(s) 544, 780, 781, 879, 1844
BsmAI GTCTC 2 cut(s) 11, 1922
BsmFI GGGAC 2 cut(s) 935, 1799
BsmI GAATGC 2 cut(s) 854, 1241
BsnI GGCC 5 cut(s) 35, 326, 1383, 1874, 2010
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 964, 1053
Bsp13I TCCGGA 2 cut(s) 302, 1946
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 5 cut(s) 5, 14, 387, 464, 1979
BspANI GGCC 5 cut(s) 35, 326, 1383, 1874, 2010
BspCNI CTCAG 8 cut(s) 45, 394, 640, 817, 1579, 1786, 1794, 2025
BspDI ATCGAT 1 cut(s) 1497
BspEI TCCGGA 2 cut(s) 302, 1946
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 2 cut(s) 1270, 1764
BspLI GGNNCC 5 cut(s) 307, 472, 520, 1316, 1801
BspPI GGATC 6 cut(s) 555, 584, 1769, 1794, 1807, 1958
BspQI GCTCTTC 1 cut(s) 1041
BspT107I GGYRCC 1 cut(s) 1314
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 2 cut(s) 884, 1411
BssECI CCNNGG 2 cut(s) 309, 837
BssSI CACGAG 1 cut(s) 1119
BssT1I CCWWGG 2 cut(s) 309, 837
Bst2BI CACGAG 1 cut(s) 1119
Bst2UI CCWGG 2 cut(s) 32, 985
Bst4CI ACNGT 3 cut(s) 366, 481, 1043
Bst6I CTCTTC 7 cut(s) 539, 690, 1041, 1587, 1598, 1862, 2076
BstC8I GCNNGC 4 cut(s) 170, 462, 821, 2058
BstDEI CTNAG 8 cut(s) 53, 402, 648, 825, 1587, 1773, 1781, 2012
BstENI CCTNNNNNAGG 1 cut(s) 542
BstF5I GGATG 7 cut(s) 16, 847, 1053, 1495, 1966, 2001, 2032
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 1453
BstHHI GCGC 2 cut(s) 819, 1452
BstMAI GTCTC 2 cut(s) 11, 1922
BstMCI CGRYCG 1 cut(s) 1497
BstMWI GCNNNNNNNGC 4 cut(s) 11, 32, 820, 1298
BstNI CCWGG 2 cut(s) 32, 985
BstNSI RCATGY 1 cut(s) 1810
BstSCI CCNGG 2 cut(s) 30, 983
BstSFI CTRYAG 2 cut(s) 76, 1509
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 8 cut(s) 517, 801, 838, 1703, 1902, 1905, 2045, 2062
BstV2I GAAGAC 3 cut(s) 647, 1281, 1826
BstX2I RGATCY 1 cut(s) 1799
BstYI RGATCY 1 cut(s) 1799
Bsu15I ATCGAT 1 cut(s) 1497
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 5 cut(s) 35, 326, 1383, 1874, 2010
BsuTUI ATCGAT 1 cut(s) 1497
BtsCI GGATG 7 cut(s) 16, 847, 1053, 1495, 1966, 2001, 2032
BtsI GCAGTG 1 cut(s) 1431
BtsIMutI CAGTG 2 cut(s) 1106, 1431
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 4 cut(s) 170, 462, 821, 2058
CaiI CAGNNNCTG 1 cut(s) 52
CciI TCATGA 2 cut(s) 1270, 1764
CfoI GCGC 2 cut(s) 819, 1452
Cfr13I GGNCC 7 cut(s) 300, 583, 1339, 1381, 1872, 1906, 2008
ClaI ATCGAT 1 cut(s) 1497
Csp6I GTAC 1 cut(s) 1315
CviAII CATG 9 cut(s) 256, 355, 776, 1271, 1483, 1765, 1795, 1807, 1852
CviQI GTAC 1 cut(s) 1315
DdeI CTNAG 8 cut(s) 53, 402, 648, 825, 1587, 1773, 1781, 2012
DrdI GACNNNNNNGTC 1 cut(s) 1898
DseDI GACNNNNNNGTC 1 cut(s) 1898
Eam1104I CTCTTC 7 cut(s) 539, 690, 1041, 1587, 1598, 1862, 2076
EarI CTCTTC 7 cut(s) 539, 690, 1041, 1587, 1598, 1862, 2076
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 962, 1051
Eco130I CCWWGG 2 cut(s) 309, 837
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 2 cut(s) 964, 1053
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 4 cut(s) 300, 583, 1339, 1906
Eco53kI GAGCTC 2 cut(s) 962, 1051
Eco57I CTGAAG 2 cut(s) 1373, 2100
Eco81I CCTNAGG 1 cut(s) 825
EcoICRI GAGCTC 2 cut(s) 962, 1051
EcoNI CCTNNNNNAGG 1 cut(s) 542
EcoO109I RGGNCCY 3 cut(s) 583, 1339, 1906
EcoRI GAATTC 3 cut(s) 605, 929, 1432
EcoRII CCWGG 2 cut(s) 30, 983
EcoT14I CCWWGG 2 cut(s) 309, 837
EcoT38I GRGCYC 2 cut(s) 964, 1053
ErhI CCWWGG 2 cut(s) 309, 837
FaeI CATG 9 cut(s) 259, 358, 779, 1274, 1486, 1768, 1798, 1810, 1855
FalI AAGNNNNNCTT 4 cut(s) 909, 941, 1610, 1642
FaqI GGGAC 2 cut(s) 935, 1799
FatI CATG 9 cut(s) 255, 354, 775, 1270, 1482, 1764, 1794, 1806, 1851
FauI CCCGC 1 cut(s) 457
FbaI TGATCA 2 cut(s) 60, 1155
FblI GTMKAC 1 cut(s) 2103
Fnu4HI GCNGC 9 cut(s) 506, 815, 852, 1717, 1916, 1919, 1980, 2034, 2076
FokI GGATG 7 cut(s) 23, 854, 1040, 1502, 1973, 2008, 2039
FriOI GRGCYC 2 cut(s) 964, 1053
Fsp4HI GCNGC 9 cut(s) 506, 815, 852, 1717, 1916, 1919, 1980, 2034, 2076
FspBI CTAG 3 cut(s) 486, 509, 563
FspI TGCGCA 1 cut(s) 818
GlaI GCGC 2 cut(s) 818, 1451
GluI GCNGC 9 cut(s) 506, 815, 852, 1717, 1916, 1919, 1980, 2034, 2076
GsaI CCCAGC 1 cut(s) 2009
HaeII RGCGCY 1 cut(s) 1453
HaeIII GGCC 5 cut(s) 35, 326, 1383, 1874, 2010
HapII CCGG 4 cut(s) 185, 303, 1312, 1947
HhaI GCGC 2 cut(s) 819, 1452
Hin1II CATG 9 cut(s) 259, 358, 779, 1274, 1486, 1768, 1798, 1810, 1855
Hin6I GCGC 2 cut(s) 817, 1450
HinP1I GCGC 2 cut(s) 817, 1450
HincII GTYRAC 3 cut(s) 220, 721, 2104
HindII GTYRAC 3 cut(s) 220, 721, 2104
HindIII AAGCTT 2 cut(s) 170, 1571
HpaI GTTAAC 1 cut(s) 721
HpaII CCGG 4 cut(s) 185, 303, 1312, 1947
HphI GGTGA 8 cut(s) 286, 469, 1165, 1346, 1421, 1735, 1742, 2051
Hpy166II GTNNAC 5 cut(s) 220, 277, 721, 1090, 2104
Hpy188I TCNGA 7 cut(s) 54, 60, 124, 346, 604, 1096, 1693
Hpy8I GTNNAC 5 cut(s) 220, 277, 721, 1090, 2104
HpyCH4III ACNGT 3 cut(s) 366, 481, 1043
HpyCH4V TGCA 6 cut(s) 296, 331, 854, 1182, 1641, 2048
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 32, 820, 1298
HpyF3I CTNAG 8 cut(s) 53, 402, 648, 825, 1587, 1773, 1781, 2012
Hsp92II CATG 9 cut(s) 259, 358, 779, 1274, 1486, 1768, 1798, 1810, 1855
HspAI GCGC 2 cut(s) 817, 1450
Kpn2I TCCGGA 2 cut(s) 302, 1946
KpnI GGTACC 1 cut(s) 1318
Ksp22I TGATCA 2 cut(s) 60, 1155
KspAI GTTAAC 1 cut(s) 721
LguI GCTCTTC 1 cut(s) 1041
LmnI GCTCC 4 cut(s) 187, 784, 967, 1447
Lsp1109I GCAGC 8 cut(s) 517, 801, 838, 1703, 1902, 1905, 2045, 2062
LweI GCATC 6 cut(s) 115, 166, 1116, 1480, 2035, 2062
MaeI CTAG 3 cut(s) 486, 509, 563
MaeIII GTNAC 4 cut(s) 415, 481, 1363, 1723
MflI RGATCY 1 cut(s) 1799
MhlI GDGCHC 2 cut(s) 964, 1053
MluCI AATT 8 cut(s) 115, 138, 605, 831, 929, 1295, 1432, 1698
MlyI GAGTC 2 cut(s) 64, 1085
MmeI TCCRAC 1 cut(s) 534
MroI TCCGGA 2 cut(s) 302, 1946
MseI TTAA 3 cut(s) 720, 1005, 1077
MslI CAYNNNNRTG 3 cut(s) 254, 432, 1187
MspA1I CMGCKG 1 cut(s) 2036
MspI CCGG 4 cut(s) 185, 303, 1312, 1947
MspR9I CCNGG 2 cut(s) 32, 985
Mva1269I GAATGC 2 cut(s) 854, 1241
MvaI CCWGG 2 cut(s) 32, 985
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 4 cut(s) 11, 32, 820, 1298
NlaIII CATG 9 cut(s) 259, 358, 779, 1274, 1486, 1768, 1798, 1810, 1855
NlaIV GGNNCC 5 cut(s) 307, 472, 520, 1316, 1801
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 3 cut(s) 415, 481, 1723
NruI TCGCGA 1 cut(s) 102
NsbI TGCGCA 1 cut(s) 818
NspI RCATGY 1 cut(s) 1810
PagI TCATGA 2 cut(s) 1270, 1764
PceI AGGCCT 1 cut(s) 326
PciI ACATGT 1 cut(s) 1806
PciSI GCTCTTC 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 1 cut(s) 1092
PctI GAATGC 2 cut(s) 854, 1241
PfeI GAWTC 8 cut(s) 144, 455, 740, 1633, 1706, 1848, 1950, 1986
PflMI CCANNNNNTGG 2 cut(s) 879, 1844
PkrI GCNGC 9 cut(s) 507, 816, 853, 1718, 1917, 1920, 1981, 2035, 2077
Ple19I CGATCG 1 cut(s) 1497
PleI GAGTC 2 cut(s) 63, 1085
PpsI GAGTC 2 cut(s) 63, 1085
PpuMI RGGWCCY 3 cut(s) 583, 1339, 1906
PscI ACATGT 1 cut(s) 1806
Psp124BI GAGCTC 2 cut(s) 964, 1053
Psp5II RGGWCCY 3 cut(s) 583, 1339, 1906
Psp6I CCWGG 2 cut(s) 30, 983
PspFI CCCAGC 1 cut(s) 2005
PspGI CCWGG 2 cut(s) 30, 983
PspN4I GGNNCC 5 cut(s) 307, 472, 520, 1316, 1801
PspPI GGNCC 7 cut(s) 300, 583, 1339, 1381, 1872, 1906, 2008
PspPPI RGGWCCY 3 cut(s) 583, 1339, 1906
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 1799
PvuI CGATCG 1 cut(s) 1497
PvuII CAGCTG 1 cut(s) 2036
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 1 cut(s) 1316
RsaNI GTAC 1 cut(s) 1315
RseI CAYNNNNRTG 3 cut(s) 254, 432, 1187
SacI GAGCTC 2 cut(s) 964, 1053
SalI GTCGAC 1 cut(s) 2102
SapI GCTCTTC 1 cut(s) 1041
SaqAI TTAA 3 cut(s) 720, 1005, 1077
SatI GCNGC 9 cut(s) 506, 815, 852, 1717, 1916, 1919, 1980, 2034, 2076
Sau96I GGNCC 7 cut(s) 300, 583, 1339, 1381, 1872, 1906, 2008
SchI GAGTC 2 cut(s) 64, 1085
ScrFI CCNGG 2 cut(s) 32, 985
SduI GDGCHC 2 cut(s) 964, 1053
SfaNI GCATC 6 cut(s) 115, 166, 1116, 1480, 2035, 2062
SfcI CTRYAG 2 cut(s) 76, 1509
SinI GGWCC 4 cut(s) 300, 583, 1339, 1906
SmiMI CAYNNNNRTG 3 cut(s) 254, 432, 1187
SmlI CTYRAG 2 cut(s) 539, 1454
SmoI CTYRAG 2 cut(s) 539, 1454
Sse9I AATT 8 cut(s) 115, 138, 605, 831, 929, 1295, 1432, 1698
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 5 cut(s) 5, 14, 387, 464, 1979
SspMI CTAG 3 cut(s) 486, 509, 563
SstI GAGCTC 2 cut(s) 964, 1053
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 30, 983
StyI CCWWGG 2 cut(s) 309, 837
TaaI ACNGT 3 cut(s) 366, 481, 1043
TaqI TCGA 7 cut(s) 142, 147, 969, 1497, 1811, 1926, 2103
TasI AATT 8 cut(s) 115, 138, 605, 831, 929, 1295, 1432, 1698
TauI GCSGC 1 cut(s) 1982
TfiI GAWTC 8 cut(s) 144, 455, 740, 1633, 1706, 1848, 1950, 1986
Tru1I TTAA 3 cut(s) 720, 1005, 1077
Tru9I TTAA 3 cut(s) 720, 1005, 1077
TscAI CASTG 2 cut(s) 1113, 1431
TseFI GTSAC 3 cut(s) 415, 481, 1723
TseI GCWGC 8 cut(s) 505, 814, 851, 1716, 1915, 1918, 2033, 2075
Tsp45I GTSAC 3 cut(s) 415, 481, 1723
TspGWI ACGGA 3 cut(s) 173, 650, 954
TspRI CASTG 2 cut(s) 1113, 1431
Van91I CCANNNNNTGG 2 cut(s) 879, 1844
VpaK11BI GGWCC 4 cut(s) 300, 583, 1339, 1906
XagI CCTNNNNNAGG 1 cut(s) 542
XapI RAATTY 4 cut(s) 138, 605, 929, 1432
XbaI TCTAGA 1 cut(s) 562
XceI RCATGY 1 cut(s) 1810
XcmI CCANNNNNNNNNTGG 2 cut(s) 268, 316
XmiI GTMKAC 1 cut(s) 2103
XspI CTAG 3 cut(s) 486, 509, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.