Rorug06G0195400

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000429
Physical Location & Seq
Forward (+)
31595524 .. 31600722
5199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0195400.1

Sequence Viewer

Length: 612 bp
ATGTTATTTGCAGTAGAAGGAGGAGGGTTCTTCTCGTCTTCAGCTTCTGGGTATAGCAAAGGTTTGGCCCTTCTACTCTTGGGTCACAAGGACGACGACGATAAACCCATGAGAGTTTCGCCGTGGAATCAGTACCAGTTGGTGGACCAAGAATCTGACTCTCACCTCCAGCTGGCTTCCACGAAGAACCGACTTTCCCGCGGTTGCGCCTCCTTTGTCTGCTTTGGTCGCGCTTCCGCCGGGCTTGACACTCCCTCTCCTCTTAAAGTGGGCCCTGCCCAACAGCAGGATGTCTTGCACGAGTCTGTTGCTTCTGATAAAGGCGAGGATCATACTGCTACCCCTGAGGAGTTTCATACTGCAAGAAAACTTGCTCTCAAAAGTAGCTTGAAGAAGCCATCAAAAAGCATACCAGTTCCTGTCCAGAGTTCTAATGAACATGAAACAAATAGTCACATTCCAGGCAATGCAGAAAGGAGAAAAGTGCAGTGGACTGATACTTGTGGGAGTGAGCTCGTTGATATCAGAGAATTTGAACCCAGTGAAGCGGATGGATCAGATGATGAATTCAACAATGGGAATGAAAGAAGTTGTTCATGTGTGGTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

203

Amino Acids

22.07

Weight (kDa)

5.23

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 142
AccII CGCG 2 cut(s) 201, 231
AciI CCGC 4 cut(s) 199, 201, 237, 548
AclWI GGATC 2 cut(s) 336, 562
AcsI RAATTY 2 cut(s) 530, 566
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 142, 172, 286
AgsI TTSAA 3 cut(s) 391, 536, 571
AjnI CCWGG 1 cut(s) 460
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 4 cut(s) 44, 172, 387, 514
AluI AGCT 4 cut(s) 44, 172, 387, 514
Alw21I GWGCWC 1 cut(s) 516
AlwI GGATC 2 cut(s) 336, 562
AlwNI CAGNNNCTG 2 cut(s) 47, 419
AoxI GGCC 2 cut(s) 66, 271
ApaI GGGCCC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 530, 566
Asp700I GAANNNNTTC 1 cut(s) 592
AspLEI GCGC 2 cut(s) 209, 233
AspS9I GGNCC 4 cut(s) 67, 145, 271, 272
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 275
BanII GRGCYC 2 cut(s) 275, 516
BauI CACGAG 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 516
BccI CCATC 2 cut(s) 406, 545
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 1 cut(s) 462
BcnI CCSGG 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 241, 462
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 4 cut(s) 67, 145, 271, 272
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 241, 462
BmrI ACTGGG 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 534
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 122, 199
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 172, 286
Bse1I ACTGG 3 cut(s) 136, 413, 540
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 122, 199
BseGI GGATG 2 cut(s) 295, 556
BseLI CCNNNNNNNGG 3 cut(s) 142, 172, 286
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 136, 413, 540
BseRI GAGGAG 3 cut(s) 36, 249, 362
BseSI GKGCMC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 2 cut(s) 201, 231
BshFI GGCC 2 cut(s) 68, 273
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 142, 172, 286
BsnI GGCC 2 cut(s) 68, 273
Bsp120I GGGCCC 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 275, 516
Bsp143I GATC 2 cut(s) 328, 554
BspACI CCGC 4 cut(s) 199, 201, 237, 548
BspANI GGCC 2 cut(s) 68, 273
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 2 cut(s) 201, 231
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 336, 562
BsrDI GCAATG 1 cut(s) 472
BsrI ACTGG 3 cut(s) 136, 413, 540
BssECI CCNNGG 2 cut(s) 122, 199
BssMI GATC 2 cut(s) 328, 554
BssSI CACGAG 1 cut(s) 299
Bst2BI CACGAG 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 2 cut(s) 122, 199
BstF5I GGATG 2 cut(s) 295, 556
BstFNI CGCG 2 cut(s) 201, 231
BstHHI GCGC 2 cut(s) 209, 233
BstKTI GATC 2 cut(s) 331, 557
BstMBI GATC 2 cut(s) 328, 554
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 239, 460
BstSLI GKGCMC 1 cut(s) 275
BstUI CGCG 2 cut(s) 201, 231
BstV2I GAAGAC 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 2 cut(s) 68, 273
BtgI CCRYGG 2 cut(s) 122, 199
BtsCI GGATG 2 cut(s) 295, 556
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 2 cut(s) 494, 547
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 2 cut(s) 47, 419
CfoI GCGC 2 cut(s) 209, 233
Cfr13I GGNCC 4 cut(s) 67, 145, 271, 272
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 109, 440, 597
CviJI RGCY 9 cut(s) 44, 68, 172, 176, 244, 273, 387, 397, 514
CviKI_1 RGCY 9 cut(s) 44, 68, 172, 176, 244, 273, 387, 397, 514
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 330, 556
DpnII GATC 2 cut(s) 328, 554
EciI GGCGGA 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 514
Eco24I GRGCYC 2 cut(s) 275, 516
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 24
Eco81I CCTNAGG 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 460
EcoRV GATATC 1 cut(s) 523
EcoT38I GRGCYC 2 cut(s) 275, 516
FaeI CATG 3 cut(s) 112, 443, 600
FaiI YATR 8 cut(s) 54, 110, 333, 357, 410, 441, 598, 608
FatI CATG 3 cut(s) 108, 439, 596
FauI CCCGC 1 cut(s) 206
FokI GGATG 2 cut(s) 302, 563
FriOI GRGCYC 2 cut(s) 275, 516
GlaI GCGC 2 cut(s) 208, 232
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 68, 273
HapII CCGG 1 cut(s) 240
HhaI GCGC 2 cut(s) 209, 233
Hin1II CATG 3 cut(s) 112, 443, 600
Hin6I GCGC 2 cut(s) 207, 231
HinP1I GCGC 2 cut(s) 207, 231
HinfI GANTC 4 cut(s) 127, 152, 158, 302
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 145, 492
Hpy188I TCNGA 4 cut(s) 157, 316, 527, 559
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 2 cut(s) 145, 492
Hpy99I CGWCG 2 cut(s) 98, 101
HpyAV CCTTC 2 cut(s) 11, 80
HpyCH4V TGCA 5 cut(s) 11, 298, 362, 470, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 3 cut(s) 112, 443, 600
HspAI GCGC 2 cut(s) 207, 231
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 328, 554
MaeIII GTNAC 2 cut(s) 83, 452
MalI GATC 2 cut(s) 330, 556
MboI GATC 2 cut(s) 328, 554
MboII GAAGA 4 cut(s) 22, 30, 196, 403
MhlI GDGCHC 2 cut(s) 275, 516
MluCI AATT 2 cut(s) 530, 566
MlyI GAGTC 2 cut(s) 152, 311
MnlI CCTC 8 cut(s) 14, 17, 176, 220, 265, 270, 319, 340
MroXI GAANNNNTTC 1 cut(s) 592
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 2 cut(s) 172, 201
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 2 cut(s) 241, 462
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 2 cut(s) 201, 231
MwoI GCNNNNNNNGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 241
NdeII GATC 2 cut(s) 328, 554
NlaIII CATG 3 cut(s) 112, 443, 600
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 2 cut(s) 83, 452
PdmI GAANNNNTTC 1 cut(s) 592
PfeI GAWTC 2 cut(s) 127, 152
PflMI CCANNNNNTGG 1 cut(s) 142
PleI GAGTC 2 cut(s) 152, 310
PpsI GAGTC 2 cut(s) 152, 310
Psp124BI GAGCTC 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 273
PspOMI GGGCCC 1 cut(s) 271
PspPI GGNCC 4 cut(s) 67, 145, 271, 272
PstNI CAGNNNCTG 2 cut(s) 47, 419
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 516
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 264
Sau3AI GATC 2 cut(s) 328, 554
Sau96I GGNCC 4 cut(s) 67, 145, 271, 272
SchI GAGTC 2 cut(s) 152, 311
ScrFI CCNGG 2 cut(s) 241, 462
SduI GDGCHC 2 cut(s) 275, 516
SetI ASST 6 cut(s) 46, 64, 168, 174, 389, 516
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 1 cut(s) 145
Sse9I AATT 2 cut(s) 530, 566
SsiI CCGC 4 cut(s) 199, 201, 237, 548
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 2 cut(s) 239, 460
TasI AATT 2 cut(s) 530, 566
TfiI GAWTC 2 cut(s) 127, 152
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 494, 547
TseFI GTSAC 2 cut(s) 83, 452
Tsp45I GTSAC 2 cut(s) 83, 452
TspDTI ATGAA 6 cut(s) 344, 450, 456, 579, 585, 597
TspRI CASTG 2 cut(s) 494, 547
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 2 cut(s) 530, 566
XmnI GAANNNNTTC 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.