Rh6BG313400

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000429
Physical Location & Seq
Forward (+)
54337031 .. 54352452
15422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG313400.1

Sequence Viewer

Length: 837 bp
ATGAGGCAAAGAGAGTTGCTGGAGTTTAGAACACCTCAACACCCATCATCATTGGGTGCAAACAACTGGGGTGGTGCATCTCCCTTATTAGCAAGAAACATACCGAAAGAGTCACTTGAACAGAAGTATCTGAAGCTCAACACCATTCGCCTGCGTGATGAAATCTTTCCTGATGCTGAGGAAGATGAGTCCATGGATTACTTACCTAGAAACTCTCCTGGCCCTAAACAAGAATGTCCACCAACGCCGAGCCGAAGAAAAAGATTTCTATCGAAGCTTTTCTTGTCATCTCCAAAGCCAAAGGCTAATTTGGGTTCAAAGAAAAAGTCATGGTTCCCTAGATGGGACCCTCAAAATAGAGAGGTCATTGGAAGTTATTCTGTGGAGGCGAGGAAGCTAAGTTTGGGCCTTTCGGAACTTATATGTGAAGGTTTAGGACTCGAATCTGGATTTTTTGGTGATGAACTTACCCAAGTGCAAGTAATGGCTTTGAATCATTACCCGCCTTGCCCCAACCCTAGCATAACCTTGGGATTACTTAAACATTGCGATAGCAACCTCTTAACTCTGCTTATACATGAACAAGAGGTTCATGGTCTTCAAGTCTTCAAAGATGAGCAGTGGTTCGTTGTTGAGCCTGTCCCTGATGCCTTTGTGGTTAATATAGGCCACACTTTACAGATTATCAGTAACGGGAAGCTAAGCAGTGCTGAGCACAGAGTTGTAACAAACAAAAAGGTTTCAAGGATGTCAGTGATAGTTTTAAAAATTCCAGGTTTGCCGAAAATCTCCCAACTGCTGGTATCTATTGGGTCTCCAGTTGATGTGCAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

278

Amino Acids

31.2

Weight (kDa)

8.82

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 160 - 254 6.6e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 799
AciI CCGC 1 cut(s) 503
AcsI RAATTY 1 cut(s) 768
AcuI CTGAAG 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 343, 799
AgsI TTSAA 6 cut(s) 119, 318, 493, 602, 610, 744
AjnI CCWGG 2 cut(s) 217, 772
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 4 cut(s) 136, 277, 397, 700
AluI AGCT 4 cut(s) 136, 277, 397, 700
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 1 cut(s) 819
AoxI GGCC 3 cut(s) 220, 406, 667
ApoI RAATTY 1 cut(s) 768
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp700I GAANNNNTTC 3 cut(s) 165, 278, 376
AspS9I GGNCC 3 cut(s) 221, 346, 406
AsuHPI GGTGA 1 cut(s) 470
AvaII GGWCC 1 cut(s) 346
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BbsI GAAGAC 2 cut(s) 590, 598
Bbv12I GWGCWC 1 cut(s) 717
BbvCI CCTCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 52, 336
BciT130I CCWGG 2 cut(s) 219, 774
BcoDI GTCTC 1 cut(s) 819
BfaI CTAG 3 cut(s) 207, 339, 519
BlpI GCTNAGC 2 cut(s) 701, 711
Bme1390I CCNGG 2 cut(s) 219, 774
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 3 cut(s) 221, 346, 406
BmiI GGNNCC 3 cut(s) 335, 347, 348
BmrFI CCNGG 2 cut(s) 219, 774
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 3 cut(s) 86, 163, 637
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 2 cut(s) 590, 598
BpmI CTGGAG 2 cut(s) 41, 801
Bpu10I CCTNAGC 1 cut(s) 177
Bpu1102I GCTNAGC 2 cut(s) 701, 711
BsaBI GATNNNNATC 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 819
BsaJI CCNNGG 2 cut(s) 192, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 799
Bse1I ACTGG 2 cut(s) 71, 818
Bse3DI GCAATG 1 cut(s) 544
Bse8I GATNNNNATC 1 cut(s) 268
BseBI CCWGG 2 cut(s) 219, 774
BseDI CCNNGG 2 cut(s) 192, 528
BseGI GGATG 1 cut(s) 753
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 343, 799
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 2 cut(s) 168, 702
BseNI ACTGG 2 cut(s) 71, 818
BshFI GGCC 3 cut(s) 222, 408, 669
BsiHKAI GWGCWC 1 cut(s) 717
BslFI GGGAC 2 cut(s) 359, 626
BslI CCNNNNNNNGG 2 cut(s) 343, 799
BsmAI GTCTC 1 cut(s) 819
BsmFI GGGAC 2 cut(s) 359, 626
BsnI GGCC 3 cut(s) 222, 408, 669
Bso31I GGTCTC 1 cut(s) 819
Bsp1286I GDGCHC 1 cut(s) 717
Bsp1720I GCTNAGC 2 cut(s) 701, 711
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 1 cut(s) 503
BspANI GGCC 3 cut(s) 222, 408, 669
BspCNI CTCAG 2 cut(s) 169, 703
BspLI GGNNCC 3 cut(s) 335, 347, 348
BspTNI GGTCTC 1 cut(s) 819
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 2 cut(s) 71, 818
BssECI CCNNGG 2 cut(s) 192, 528
BssT1I CCWWGG 2 cut(s) 192, 528
Bst2UI CCWGG 2 cut(s) 219, 774
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 4 cut(s) 177, 398, 701, 711
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 753
BstMAI GTCTC 1 cut(s) 819
BstNI CCWGG 2 cut(s) 219, 774
BstSCI CCNGG 2 cut(s) 217, 772
BstV2I GAAGAC 2 cut(s) 590, 598
BsuRI GGCC 3 cut(s) 222, 408, 669
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 753
BtsI GCAGTG 2 cut(s) 626, 712
BtsIMutI CAGTG 3 cut(s) 626, 712, 759
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 221, 346, 406
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 4 cut(s) 193, 330, 578, 593
DdeI CTNAG 4 cut(s) 177, 398, 701, 711
DraI TTTAAA 1 cut(s) 765
Eco130I CCWWGG 2 cut(s) 192, 528
Eco31I GGTCTC 1 cut(s) 819
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 217, 772
EcoT14I CCWWGG 2 cut(s) 192, 528
ErhI CCWWGG 2 cut(s) 192, 528
FaeI CATG 4 cut(s) 196, 333, 581, 596
FalI AAGNNNNNCTT 4 cut(s) 99, 131, 266, 298
FaqI GGGAC 2 cut(s) 359, 626
FatI CATG 4 cut(s) 192, 329, 577, 592
FauI CCCGC 1 cut(s) 510
FokI GGATG 1 cut(s) 760
FspBI CTAG 3 cut(s) 207, 339, 519
GsuI CTGGAG 2 cut(s) 41, 801
HaeIII GGCC 3 cut(s) 222, 408, 669
Hin1II CATG 4 cut(s) 196, 333, 581, 596
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 5 cut(s) 110, 188, 438, 443, 493
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 3 cut(s) 132, 415, 836
Hpy188III TCNNGA 2 cut(s) 170, 447
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 422
HpyCH4V TGCA 4 cut(s) 59, 77, 478, 829
HpyF3I CTNAG 4 cut(s) 177, 398, 701, 711
Hsp92II CATG 4 cut(s) 196, 333, 581, 596
KflI GGGWCCC 1 cut(s) 346
LweI GCATC 3 cut(s) 86, 163, 637
MaeI CTAG 3 cut(s) 207, 339, 519
MaeIII GTNAC 3 cut(s) 111, 689, 724
MboII GAAGA 4 cut(s) 194, 267, 590, 598
MhlI GDGCHC 1 cut(s) 717
MluCI AATT 2 cut(s) 307, 768
MlyI GAGTC 3 cut(s) 119, 197, 432
MnlI CCTC 8 cut(s) 45, 172, 355, 360, 379, 384, 569, 580
MroXI GAANNNNTTC 3 cut(s) 165, 278, 376
MseI TTAA 4 cut(s) 540, 563, 660, 764
MspR9I CCNGG 2 cut(s) 219, 774
MvaI CCWGG 2 cut(s) 219, 774
NcoI CCATGG 1 cut(s) 192
NlaIII CATG 4 cut(s) 196, 333, 581, 596
NlaIV GGNNCC 3 cut(s) 335, 347, 348
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 111
PdmI GAANNNNTTC 3 cut(s) 165, 278, 376
PfeI GAWTC 2 cut(s) 443, 493
PflMI CCANNNNNTGG 1 cut(s) 799
PleI GAGTC 3 cut(s) 118, 196, 432
PpsI GAGTC 3 cut(s) 118, 196, 432
PpuMI RGGWCCY 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 217, 772
PspGI CCWGG 2 cut(s) 217, 772
PspN4I GGNNCC 3 cut(s) 335, 347, 348
PspPI GGNCC 3 cut(s) 221, 346, 406
PspPPI RGGWCCY 1 cut(s) 346
SaqAI TTAA 4 cut(s) 540, 563, 660, 764
Sau96I GGNCC 3 cut(s) 221, 346, 406
SchI GAGTC 3 cut(s) 119, 197, 432
ScrFI CCNGG 2 cut(s) 219, 774
SduI GDGCHC 1 cut(s) 717
SfaNI GCATC 3 cut(s) 86, 163, 637
SinI GGWCC 1 cut(s) 346
Sse9I AATT 2 cut(s) 307, 768
SsiI CCGC 1 cut(s) 503
SspMI CTAG 3 cut(s) 207, 339, 519
StyD4I CCNGG 2 cut(s) 217, 772
StyI CCWWGG 2 cut(s) 192, 528
TaqI TCGA 2 cut(s) 272, 441
TasI AATT 2 cut(s) 307, 768
TfiI GAWTC 2 cut(s) 443, 493
Tru1I TTAA 4 cut(s) 540, 563, 660, 764
Tru9I TTAA 4 cut(s) 540, 563, 660, 764
TscAI CASTG 3 cut(s) 626, 712, 759
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 4 cut(s) 174, 477, 581, 594
TspRI CASTG 3 cut(s) 626, 712, 759
Van91I CCANNNNNTGG 1 cut(s) 799
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 1 cut(s) 768
XmnI GAANNNNTTC 3 cut(s) 165, 278, 376
XspI CTAG 3 cut(s) 207, 339, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.