Rorug06G0196500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000429
Physical Location & Seq
Reverse (-)
31684121 .. 31688060
3940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0196500.1

Sequence Viewer

Length: 561 bp
ATGGCTCCGAGAGGTCGGCCCAGAAAGAGGGGTAATCCTCATTTGGATGCAGCTCTTAAGGCTATGGCTGCCCTTACTTTTCCAGAGAAACTAGTCCGTGATACAGTGGATGAGTTACTTGAAGTTTATGGAGGAGATGATGGATGGGGCTTTATTGAAGACGCTTCTTATTCTGTCCTTATCGATACTCTTCTCGAAAGACAAAAAGATGGTACTGAAAAGTGGATTGCTTCTCCACGAGATCATGCAAGAAGTGAACATGATACTGAAGCTTCAGCTGTTCTGCCTTCCTCAAGCAGGGTTAGTTCACCTACCTGCACACCAATGGAGGTTTTGCAACCACAGACTAATCAACCTCTGAACTCTGCACCACTGACTCAAATGCCAGATTCTAAGGATTGTCTTCCATCCAAGAGGCGTAGACCATATCACGGTTGGATAGGCAATGATGATGAGGATCTTGTTCTTGTGGAACTCACACCAGCTCCATTGCCACAAGGGCTGAAACTTCTTTATTGTGTAATGGGAAGTGAATCTGCAAGACAAGGTGGAAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

186

Amino Acids

20.49

Weight (kDa)

5.24

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 9 - 68 1.5e-18 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 421
AclWI GGATC 1 cut(s) 465
AcuI CTGAAG 2 cut(s) 258, 288
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 27, 297, 431
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 122, 158
AhlI ACTAGT 1 cut(s) 91
AluBI AGCT 4 cut(s) 53, 272, 278, 485
AluI AGCT 4 cut(s) 53, 272, 278, 485
AlwI GGATC 1 cut(s) 465
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 50, 68
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 300
BauI CACGAG 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 165, 395
BbvI GCAGC 2 cut(s) 55, 62
BccI CCATC 4 cut(s) 134, 138, 203, 415
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 1 cut(s) 92
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 323
BglI GCCNNNNNGGC 1 cut(s) 499
BisI GCNGC 2 cut(s) 51, 69
BlsI GCNGC 2 cut(s) 52, 70
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 165, 395
BpuEI CTTGAG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 297, 431
Bse3DI GCAATG 2 cut(s) 451, 488
Bse8I GATNNNNATC 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 4 cut(s) 52, 115, 149, 407
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 27, 297, 431
BseMI GCAATG 2 cut(s) 451, 488
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 55, 62
BsgI GTGCAG 2 cut(s) 301, 351
BshFI GGCC 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 27, 297, 431
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 241, 457
BspANI GGCC 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 451, 488
BssMI GATC 2 cut(s) 241, 457
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 106, 434
Bst6I CTCTTC 1 cut(s) 195
BstAFI CTTAAG 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 4 cut(s) 52, 115, 149, 407
BstKTI GATC 2 cut(s) 244, 460
BstMBI GATC 2 cut(s) 241, 457
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 499
BstV1I GCAGC 2 cut(s) 55, 62
BstV2I GAAGAC 2 cut(s) 165, 395
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 183
BsuRI GGCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 4 cut(s) 52, 115, 149, 407
BtsIMutI CAGTG 2 cut(s) 111, 371
BveI ACCTGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 245, 260
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 393
DpnI GATC 2 cut(s) 243, 459
DpnII GATC 2 cut(s) 241, 457
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 258, 288
EcoNI CCTNNNNNAGG 1 cut(s) 295
FaeI CATG 2 cut(s) 248, 263
FaiI YATR 6 cut(s) 65, 129, 246, 261, 427, 557
FatI CATG 2 cut(s) 244, 259
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 51, 69
FokI GGATG 4 cut(s) 59, 122, 156, 394
Fsp4HI GCNGC 2 cut(s) 51, 69
FspBI CTAG 1 cut(s) 92
GluI GCNGC 2 cut(s) 51, 69
HaeIII GGCC 1 cut(s) 19
HgaI GACGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 248, 263
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 3 cut(s) 376, 389, 533
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 3 cut(s) 257, 308, 422
Hpy188I TCNGA 2 cut(s) 9, 360
Hpy188III TCNNGA 2 cut(s) 83, 194
Hpy8I GTNNAC 3 cut(s) 257, 308, 422
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 2 cut(s) 106, 434
HpyCH4V TGCA 6 cut(s) 50, 248, 318, 337, 368, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 499
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 2 cut(s) 248, 263
Kzo9I GATC 2 cut(s) 241, 457
LmnI GCTCC 2 cut(s) 10, 490
LpnPI CCDG 6 cut(s) 34, 96, 283, 328, 399, 495
Lsp1109I GCAGC 2 cut(s) 55, 62
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 114
MalI GATC 2 cut(s) 243, 459
MboI GATC 2 cut(s) 241, 457
MboII GAAGA 3 cut(s) 170, 182, 395
MflI RGATCY 1 cut(s) 457
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 9 cut(s) 5, 21, 48, 125, 301, 322, 366, 408, 448
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 2 cut(s) 45, 323
MspA1I CMGCKG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 499
NdeII GATC 2 cut(s) 241, 457
NlaIII CATG 2 cut(s) 248, 263
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 389, 533
PkrI GCNGC 2 cut(s) 52, 70
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 2 cut(s) 45, 323
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 51, 69
Sau3AI GATC 2 cut(s) 241, 457
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 370
SfaNI GCATC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 45, 323
SmlI CTYRAG 2 cut(s) 56, 292
SmoI CTYRAG 2 cut(s) 56, 292
SpeI ACTAGT 1 cut(s) 91
SspMI CTAG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 106, 434
TaqI TCGA 2 cut(s) 183, 195
TfiI GAWTC 2 cut(s) 389, 533
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 111, 378
TseI GCWGC 2 cut(s) 50, 68
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 2 cut(s) 111, 378
Vha464I CTTAAG 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.