Prupe.1G354100_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000429
Physical Location & Seq
Reverse (-)
32905306 .. 32907052
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G354100.2

Sequence Viewer

Length: 1101 bp
ATGCAACGGGACGACTTTCCTTGTACCTGCTTGAAAACAATGGAGAAGCTTATTTCAAGCAGCTACAAGGAAAGACCCTTCCCTGAGACTTACATATTCCCACCTGATGCAAGACCAGGGAAGCTTGCCGTTCCTTTGTGCAACAACATTCCAGTGATTGATTTGGGTGGTGGAGCAGAAGAAGCTTCTGAATCTGATGACCGAAGAACCTATATACTAGAGCAAATACTCAAGGCTAGCCAAGAATTTGGATTTTTTCAGGTAATTAATCATGGCATATCAGAACATTTGTTGAGTGAGACAATGCGTGTGTTCAAGGAGTTTTTTGAAGAGTTGCCTGCAGAGGACAAAGCAAGCCTCTACTCTGAGGACCCCAACAAAAGCTGCAGGCTCTTCACCAGCAGCAGCACTGGAAATTATGATGGGGAAGATGTTCATATCTGGCGTGACTGCCTAAAACACCCTTGCCATCCTCTTGAGGAATGCAAGCATGTTTGGCCTCAAAAACCAATTAGATATGGAGAGCTTGTTGGGGCATGTTCCACACAAGTGAGGGAACTGGCTTCAAACATTTTGGAGCTAATCGGTGAAGGACTTGGGGTTGGAGCTGGGTATTTCAGGGATGAACTAAGCCAACAAATGTTACTCTCAGTTAATTATTACCCACCTTGCCCAGAACCAAGTTTGACACTAGGATTACCTAAACACTGTGACCCAAACCTCATAACCATTTTACTTCAAGGAGATGTAAATGGTCTTCAAGTTTTCAAGGATGGGGAATGGATTGGTGTGGAGCCTCTTCCACATGCACTTGTGGTTAATGTAGGTTATCAGTTACAGATTATCAGCAATGGCAAGTTGAAAAGTGCTGAACATCGGGCAGTGACGAATTCAAGTGAAGCTCGGATTTCAGCTGGGTTTTTCGTGATGCCTTCCAATGACTGCCTTATAGAACCTGCTGCAGCTCTTATTAATGCAAGCAATCCCCAACTTTATAAAGGCTTCCAATACAAAGACTTCTTTCTCAACTTCGGTACAAAGCTAGGTAAAACCGAACAAGTACTGGATCGCTTTAAGCTCCAAGCAAGGTTAGCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

367

Amino Acids

40.94

Weight (kDa)

5.23

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
Acc36I ACCTGC 2 cut(s) 35, 964
AclWI GGATC 1 cut(s) 1074
AcsI RAATTY 2 cut(s) 245, 889
AfaI GTAC 3 cut(s) 25, 1036, 1062
AjnI CCWGG 1 cut(s) 115
AleI CACNNNNGTG 1 cut(s) 548
Alw26I GTCTC 2 cut(s) 80, 293
AlwI GGATC 1 cut(s) 1074
AoxI GGCC 1 cut(s) 497
ApeKI GCWGC 6 cut(s) 60, 384, 402, 405, 959, 962
ApoI RAATTY 2 cut(s) 245, 889
AseI ATTAAT 2 cut(s) 267, 972
Asp700I GAANNNNTTC 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 388, 599
AsuNHI GCTAGC 2 cut(s) 236, 1094
AvaII GGWCC 1 cut(s) 370
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
BbsI GAAGAC 1 cut(s) 749
BbvI GCAGC 6 cut(s) 72, 371, 414, 417, 946, 974
BccI CCATC 3 cut(s) 416, 477, 767
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 80, 293
BfaI CTAG 5 cut(s) 218, 237, 692, 1043, 1095
BfmI CTRYAG 3 cut(s) 339, 385, 960
BfuAI ACCTGC 2 cut(s) 35, 964
BisI GCNGC 6 cut(s) 61, 385, 403, 406, 960, 963
BlsI GCNGC 6 cut(s) 62, 386, 404, 407, 961, 964
BmcAI AGTACT 1 cut(s) 1062
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 372, 795
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 97, 918
BmtI GCTAGC 2 cut(s) 240, 1098
BpiI GAAGAC 1 cut(s) 749
BpuEI CTTGAG 2 cut(s) 215, 497
BsaJI CCNNGG 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bse1I ACTGG 4 cut(s) 152, 415, 564, 1068
Bse3DI GCAATG 1 cut(s) 856
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 3 cut(s) 469, 628, 778
BseMI GCAATG 1 cut(s) 856
BseMII CTCAG 3 cut(s) 75, 357, 663
BseNI ACTGG 4 cut(s) 152, 415, 564, 1068
BseXI GCAGC 6 cut(s) 72, 371, 414, 417, 946, 974
BseYI CCCAGC 2 cut(s) 608, 914
BshFI GGCC 1 cut(s) 499
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 80, 293
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 1 cut(s) 499
Bsp143I GATC 1 cut(s) 1066
BspANI GGCC 1 cut(s) 499
BspCNI CTCAG 3 cut(s) 76, 358, 662
BspLI GGNNCC 2 cut(s) 372, 795
BspMAI CTGCAG 3 cut(s) 343, 389, 964
BspMI ACCTGC 2 cut(s) 35, 964
BspOI GCTAGC 2 cut(s) 240, 1098
BspPI GGATC 1 cut(s) 1074
BspQI GCTCTTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 856
BsrI ACTGG 4 cut(s) 152, 415, 564, 1068
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 1066
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 710
Bst6I CTCTTC 3 cut(s) 324, 398, 804
BstC8I GCNNGC 8 cut(s) 126, 238, 339, 355, 389, 488, 979, 1096
BstDEI CTNAG 4 cut(s) 84, 366, 629, 649
BstF5I GGATG 3 cut(s) 469, 628, 778
BstKTI GATC 1 cut(s) 1069
BstMAI GTCTC 2 cut(s) 80, 293
BstMBI GATC 1 cut(s) 1066
BstMWI GCNNNNNNNGC 3 cut(s) 182, 496, 1091
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 3 cut(s) 494, 540, 809
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 3 cut(s) 339, 385, 960
BstV1I GCAGC 6 cut(s) 72, 371, 414, 417, 946, 974
BstV2I GAAGAC 1 cut(s) 749
BstXI CCANNNNNNTGG 1 cut(s) 248
BsuRI GGCC 1 cut(s) 499
BtsCI GGATG 3 cut(s) 469, 628, 778
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 4 cut(s) 159, 408, 706, 888
BveI ACCTGC 2 cut(s) 35, 964
Cac8I GCNNGC 8 cut(s) 126, 238, 339, 355, 389, 488, 979, 1096
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 3 cut(s) 24, 1035, 1061
CviAII CATG 4 cut(s) 272, 491, 537, 806
CviQI GTAC 3 cut(s) 24, 1035, 1061
DdeI CTNAG 4 cut(s) 84, 366, 629, 649
DpnI GATC 1 cut(s) 1068
DpnII GATC 1 cut(s) 1066
Eam1104I CTCTTC 3 cut(s) 324, 398, 804
EarI CTCTTC 3 cut(s) 324, 398, 804
Eco47I GGWCC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 889
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 4 cut(s) 275, 494, 540, 809
FaqI GGGAC 1 cut(s) 23
FatI CATG 4 cut(s) 271, 490, 536, 805
Fnu4HI GCNGC 6 cut(s) 61, 385, 403, 406, 960, 963
FokI GGATG 3 cut(s) 456, 635, 785
Fsp4HI GCNGC 6 cut(s) 61, 385, 403, 406, 960, 963
FspBI CTAG 5 cut(s) 218, 237, 692, 1043, 1095
GluI GCNGC 6 cut(s) 61, 385, 403, 406, 960, 963
GsaI CCCAGC 2 cut(s) 612, 918
HaeIII GGCC 1 cut(s) 499
Hin1II CATG 4 cut(s) 275, 494, 540, 809
HindIII AAGCTT 3 cut(s) 47, 122, 183
HinfI GANTC 1 cut(s) 191
HphI GGTGA 2 cut(s) 388, 599
Hpy188I TCNGA 5 cut(s) 190, 196, 283, 367, 906
Hpy188III TCNNGA 2 cut(s) 476, 925
HpyAV CCTTC 3 cut(s) 88, 584, 942
HpyCH4III ACNGT 1 cut(s) 710
HpyCH4V TGCA 9 cut(s) 4, 110, 141, 341, 387, 486, 809, 962, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 496, 1091
HpyF3I CTNAG 4 cut(s) 84, 366, 629, 649
Hsp92II CATG 4 cut(s) 275, 494, 540, 809
Kzo9I GATC 1 cut(s) 1066
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 5 cut(s) 173, 577, 605, 793, 1083
Lsp1109I GCAGC 6 cut(s) 72, 371, 414, 417, 946, 974
LweI GCATC 2 cut(s) 97, 918
MaeI CTAG 5 cut(s) 218, 237, 692, 1043, 1095
MaeIII GTNAC 5 cut(s) 446, 642, 710, 834, 883
MalI GATC 1 cut(s) 1068
MboI GATC 1 cut(s) 1066
MboII GAAGA 7 cut(s) 191, 216, 341, 385, 440, 749, 791
MluCI AATT 6 cut(s) 245, 264, 415, 510, 655, 889
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 9 cut(s) 337, 361, 368, 472, 483, 510, 546, 731, 807
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 5 cut(s) 267, 654, 819, 972, 1074
MslI CAYNNNNRTG 2 cut(s) 152, 548
MspA1I CMGCKG 1 cut(s) 914
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 488
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 182, 496, 1091
NdeII GATC 1 cut(s) 1066
NheI GCTAGC 2 cut(s) 236, 1094
NlaIII CATG 4 cut(s) 275, 494, 540, 809
NlaIV GGNNCC 2 cut(s) 372, 795
NmuCI GTSAC 3 cut(s) 446, 710, 883
NspI RCATGY 3 cut(s) 494, 540, 809
OliI CACNNNNGTG 1 cut(s) 548
PciSI GCTCTTC 1 cut(s) 398
PctI GAATGC 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 6 cut(s) 62, 386, 404, 407, 961, 964
PpuMI RGGWCCY 1 cut(s) 370
PshBI ATTAAT 2 cut(s) 267, 972
PsiI TTATAA 1 cut(s) 996
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 2 cut(s) 608, 914
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 372, 795
PspPI GGNCC 1 cut(s) 370
PspPPI RGGWCCY 1 cut(s) 370
PstI CTGCAG 3 cut(s) 343, 389, 964
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 3 cut(s) 25, 1036, 1062
RsaNI GTAC 3 cut(s) 24, 1035, 1061
RseI CAYNNNNRTG 2 cut(s) 152, 548
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 5 cut(s) 267, 654, 819, 972, 1074
SatI GCNGC 6 cut(s) 61, 385, 403, 406, 960, 963
Sau3AI GATC 1 cut(s) 1066
Sau96I GGNCC 1 cut(s) 370
ScaI AGTACT 1 cut(s) 1062
ScrFI CCNGG 1 cut(s) 117
SfaNI GCATC 2 cut(s) 97, 918
SfcI CTRYAG 3 cut(s) 339, 385, 960
SinI GGWCC 1 cut(s) 370
SmiMI CAYNNNNRTG 2 cut(s) 152, 548
SmlI CTYRAG 2 cut(s) 230, 476
SmoI CTYRAG 2 cut(s) 230, 476
Sse9I AATT 6 cut(s) 245, 264, 415, 510, 655, 889
SspMI CTAG 5 cut(s) 218, 237, 692, 1043, 1095
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 710
TaqII GACCGA 1 cut(s) 216
TasI AATT 6 cut(s) 245, 264, 415, 510, 655, 889
TatI WGTACW 1 cut(s) 1060
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 5 cut(s) 267, 654, 819, 972, 1074
Tru9I TTAA 5 cut(s) 267, 654, 819, 972, 1074
TscAI CASTG 4 cut(s) 159, 415, 713, 888
TseFI GTSAC 3 cut(s) 446, 710, 883
TseI GCWGC 6 cut(s) 60, 384, 402, 405, 959, 962
Tsp45I GTSAC 3 cut(s) 446, 710, 883
TspDTI ATGAA 2 cut(s) 425, 639
TspRI CASTG 4 cut(s) 159, 415, 713, 888
VpaK11BI GGWCC 1 cut(s) 370
VspI ATTAAT 2 cut(s) 267, 972
XapI RAATTY 2 cut(s) 245, 889
XceI RCATGY 3 cut(s) 494, 540, 809
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 5 cut(s) 218, 237, 692, 1043, 1095
ZrmI AGTACT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.