Rroxscaffold_7G00180020

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000429
Physical Location & Seq
Reverse (-)
19562867 .. 19567410
4544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180020.1

Sequence Viewer

Length: 390 bp
ATGGCTGTGCTATTACTTCATATGTTTGACAAAATGTCTGAGAAGCTCATCTCAAACAGAAGTCACTTGCAATTTGTACCTGAATCCTACATATTATCCCCAGGAACTAGGCCAGGCAATACACAGGTCTCTGTATTAGACGTCATTCCAGTCATTGACTTTCAGCAACTTGGTACCAACAGACCTCAGCTGACCAAGCAAATCATAGAGGCTTCCCAACAATTCGGCTTCTTCCAGTTGATCAATCATGGGGTTGAAGACAATTTGCTGCATAACGTATTGCATGTGGCCAATGAGTTCTTTGAGCTACCTTGTGAAGATAAAGTAATTATGTATGCTAGATCTGAAGATCCTAAGCAAGGTTGTACATTATACACTAGCATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

5.22

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 49 - 121 3.4e-19 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 3 cut(s) 78, 175, 367
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 1 cut(s) 257
AhdI GACNNNNNGTC 1 cut(s) 34
AjnI CCWGG 2 cut(s) 100, 112
AluBI AGCT 3 cut(s) 46, 190, 307
AluI AGCT 3 cut(s) 46, 190, 307
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 344
AoxI GGCC 2 cut(s) 110, 288
ApeKI GCWGC 1 cut(s) 268
Asp718I GGTACC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 290
BanI GGYRCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 255
BciT130I CCWGG 2 cut(s) 102, 114
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 4 cut(s) 108, 339, 378, 388
BglII AGATCT 1 cut(s) 341
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 2 cut(s) 102, 114
BmeRI GACNNNNNGTC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 102, 114
BpiI GAAGAC 1 cut(s) 264
Bpu10I CCTNAGC 2 cut(s) 186, 354
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 2 cut(s) 149, 235
BseBI CCWGG 2 cut(s) 102, 114
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 2 cut(s) 30, 200
BseNI ACTGG 2 cut(s) 149, 235
BseXI GCAGC 1 cut(s) 255
BshFI GGCC 2 cut(s) 112, 290
BshNI GGYRCC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 2 cut(s) 112, 290
Bso31I GGTCTC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 3 cut(s) 240, 341, 349
BspANI GGCC 2 cut(s) 112, 290
BspCNI CTCAG 2 cut(s) 31, 199
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 2 cut(s) 149, 235
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 3 cut(s) 240, 341, 349
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 102, 114
BstACI GRCGYC 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 39, 186, 354
BstENI CCTNNNNNAGG 1 cut(s) 357
BstKTI GATC 3 cut(s) 243, 344, 352
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 3 cut(s) 240, 341, 349
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 2 cut(s) 102, 114
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 100, 112
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 2 cut(s) 341, 349
BstYI RGATCY 2 cut(s) 341, 349
BsuRI GGCC 2 cut(s) 112, 290
Csp6I GTAC 3 cut(s) 77, 174, 366
CviAII CATG 2 cut(s) 248, 284
CviJI RGCY 8 cut(s) 5, 46, 112, 190, 212, 228, 290, 307
CviKI_1 RGCY 8 cut(s) 5, 46, 112, 190, 212, 228, 290, 307
CviQI GTAC 3 cut(s) 77, 174, 366
DdeI CTNAG 3 cut(s) 39, 186, 354
DpnI GATC 3 cut(s) 242, 343, 351
DpnII GATC 3 cut(s) 240, 341, 349
DriI GACNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 288
Eam1105I GACNNNNNGTC 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 366
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 100, 112
FaeI CATG 2 cut(s) 251, 287
FatI CATG 2 cut(s) 247, 283
FauNDI CATATG 1 cut(s) 21
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 4 cut(s) 108, 339, 378, 388
GluI GCNGC 1 cut(s) 269
HaeIII GGCC 2 cut(s) 112, 290
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 251, 287
HinfI GANTC 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 40, 346
HpyCH4IV ACGT 2 cut(s) 141, 276
HpyCH4V TGCA 3 cut(s) 70, 271, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 3 cut(s) 39, 186, 354
HpySE526I ACGT 2 cut(s) 141, 276
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 2 cut(s) 251, 287
KpnI GGTACC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 240, 341, 349
LpnPI CCDG 8 cut(s) 87, 93, 99, 110, 114, 126, 162, 248
Lsp1109I GCAGC 1 cut(s) 255
MaeI CTAG 4 cut(s) 108, 339, 378, 388
MaeII ACGT 2 cut(s) 141, 276
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 242, 343, 351
MboI GATC 3 cut(s) 240, 341, 349
MboII GAAGA 4 cut(s) 223, 269, 329, 359
MflI RGATCY 2 cut(s) 341, 349
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 4 cut(s) 71, 221, 262, 327
MluNI TGGCCA 1 cut(s) 290
MnlI CCTC 2 cut(s) 195, 202
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 190
MspR9I CCNGG 2 cut(s) 102, 114
MvaI CCWGG 2 cut(s) 102, 114
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeI CATATG 1 cut(s) 21
NdeII GATC 3 cut(s) 240, 341, 349
NlaIII CATG 2 cut(s) 251, 287
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 287
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 100, 112
PspGI CCWGG 2 cut(s) 100, 112
PspN4I GGNNCC 1 cut(s) 175
PsuI RGATCY 2 cut(s) 341, 349
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 3 cut(s) 78, 175, 367
RsaNI GTAC 3 cut(s) 77, 174, 366
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 3 cut(s) 240, 341, 349
ScrFI CCNGG 2 cut(s) 102, 114
Sse9I AATT 4 cut(s) 71, 221, 262, 327
SspMI CTAG 4 cut(s) 108, 339, 378, 388
StyD4I CCNGG 2 cut(s) 100, 112
TaiI ACGT 2 cut(s) 144, 279
TasI AATT 4 cut(s) 71, 221, 262, 327
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 8
XagI CCTNNNNNAGG 1 cut(s) 357
XceI RCATGY 1 cut(s) 287
XspI CTAG 4 cut(s) 108, 339, 378, 388
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.