pycom15g00070

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000429
Physical Location & Seq
Reverse (-)
45654 .. 47026
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00070.3

Sequence Viewer

Length: 1053 bp
ATGGAGAAGCTTATATCAAGAAGGTACAAAGAAAGACCTATGCCTGAGGGTTACATATTCCCACCCGATGTAAGACCCGGAAAGCTTACTGTCGTTCCTCTATGCAACAACACCATTCCAGTCATTGATTTGGGTTTGGATGGTGAAGGAGCAGCACAAGCTTGTGATATAGTTGACCAAATACTTGAGGCCAGCCAAGAATTTGGATTTTTTCAGGTAATTAAACATGGGATATCAGAAAATTTGTTGAAGGAGACGGTGGGATTGTTGAAAGAGTTGTTCCAAGAGTTGCCTGATGAGGACATTGCAAGCCTCTACTCCGACGACCCCAACAAAAGCTGCAGGCTCTTCACCAGCACCAGCGGTGAAAATTTTGATGCGGAACCTGTTCATTTTTGGCGTGACAGCCTCAAACACCCTTGTCATCCTCTTTCAGAGGAATGCTACCAACTTTGGCCTAAAAAACCAACTAGATATCGAGATGTTGTCGGGGAATGTTCGACACAAGTGAGGGAACTGGCTTGGAAGATCTTGGAGCTAATGAGTCAAGGACTTGGGCTGGGACCTGGGTATTTCAGGGGTGAAGTAAGCCAAGAAATGTTACTGTCAGCAAATTATTACCCACCTTGCCCGGAACCAAGTTTAACACTAGGATTACCTAAACACGGTGATCCAAATCTTATAACCATTTTACTCCAAGGGGATGATCATGTCAGTGGTCTGCAAGTTCTCAAGGATGGGGAATGGATTTCTGTTGTTCCTTTTCCACATGCGCTTGTGGTTAATGTCGGTTATCAATTACAGGTTATCAGCAATGGCAAGTTGAAAAGTTCTGAACACCGGGTAGTGACGAATTCAAGTGCTGCTCGGATTTCAGCTGGGTTTTTCGTGATGCCTTCCCATGATTGCCTTATAGAACCTGCTGCAACTCTTATCAATGCAAGCAATCCCCAACTTTACAAAGGCTTCCCATACAAAGACTTCTTTCTCAACTTTGGTAAAACGCTGGGAAAAACCGAACAAGTACTGGATCGCTTTAAGCTTCAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

351

Amino Acids

39.09

Weight (kDa)

5.35

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 683
Acc36I ACCTGC 1 cut(s) 928
AciI CCGC 2 cut(s) 363, 380
AclWI GGATC 2 cut(s) 665, 1038
AcsI RAATTY 4 cut(s) 200, 241, 370, 853
AcuI CTGAAG 1 cut(s) 1028
AfaI GTAC 2 cut(s) 26, 1026
AfiI CCNNNNNNNGG 1 cut(s) 665
AgsI TTSAA 4 cut(s) 250, 271, 826, 858
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 7 cut(s) 10, 85, 161, 339, 538, 878, 1042
AluI AGCT 7 cut(s) 10, 85, 161, 339, 538, 878, 1042
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 2 cut(s) 665, 1038
AoxI GGCC 2 cut(s) 189, 455
ApeKI GCWGC 4 cut(s) 152, 339, 863, 923
ApoI RAATTY 4 cut(s) 200, 241, 370, 853
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 1 cut(s) 775
AspS9I GGNCC 1 cut(s) 563
AsuC2I CCSGG 3 cut(s) 78, 632, 842
AsuHPI GGTGA 5 cut(s) 155, 343, 377, 593, 680
AvaII GGWCC 1 cut(s) 563
AxyI CCTNAGG 1 cut(s) 45
BbvI GCAGC 4 cut(s) 164, 326, 850, 910
BccI CCATC 2 cut(s) 134, 731
BciT130I CCWGG 1 cut(s) 567
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 3 cut(s) 78, 632, 842
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 2 cut(s) 471, 650
BfmI CTRYAG 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 928
BglII AGATCT 1 cut(s) 528
BisI GCNGC 4 cut(s) 153, 340, 864, 924
BlsI GCNGC 4 cut(s) 154, 341, 865, 925
BmcAI AGTACT 1 cut(s) 1026
Bme1390I CCNGG 4 cut(s) 78, 567, 632, 842
Bme18I GGWCC 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 3 cut(s) 384, 564, 636
BmrFI CCNGG 4 cut(s) 78, 567, 632, 842
BmsI GCATC 2 cut(s) 367, 882
BpuEI CTTGAG 2 cut(s) 206, 716
BpuMI CCSGG 3 cut(s) 78, 632, 842
BsaBI GATNNNNATC 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 566, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse1I ACTGG 3 cut(s) 119, 522, 1032
Bse21I CCTNAGG 1 cut(s) 45
Bse3DI GCAATG 2 cut(s) 303, 820
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 2 cut(s) 566, 697
BseGI GGATG 4 cut(s) 145, 424, 709, 742
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMI GCAATG 2 cut(s) 303, 820
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 3 cut(s) 119, 522, 1032
BseXI GCAGC 4 cut(s) 164, 326, 850, 910
BseYI CCCAGC 3 cut(s) 559, 878, 1006
BshFI GGCC 2 cut(s) 191, 457
BsiSI CCGG 3 cut(s) 78, 632, 841
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 576
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 2 cut(s) 191, 457
Bsp143I GATC 4 cut(s) 528, 670, 706, 1030
BspACI CCGC 2 cut(s) 363, 380
BspANI GGCC 2 cut(s) 191, 457
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 384, 564, 636
BspMAI CTGCAG 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 2 cut(s) 665, 1038
BspQI GCTCTTC 1 cut(s) 353
BsrDI GCAATG 2 cut(s) 303, 820
BsrI ACTGG 3 cut(s) 119, 522, 1032
BssECI CCNNGG 2 cut(s) 566, 697
BssMI GATC 4 cut(s) 528, 670, 706, 1030
BssT1I CCWWGG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 91, 259, 606, 668
Bst6I CTCTTC 1 cut(s) 353
BstC8I GCNNGC 4 cut(s) 193, 310, 344, 943
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 4 cut(s) 145, 424, 709, 742
BstHHI GCGC 1 cut(s) 775
BstKTI GATC 4 cut(s) 531, 673, 709, 1033
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 4 cut(s) 528, 670, 706, 1030
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 1 cut(s) 773
BstSCI CCNGG 4 cut(s) 76, 565, 630, 840
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 4 cut(s) 164, 326, 850, 910
BstX2I RGATCY 1 cut(s) 528
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 1 cut(s) 528
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 2 cut(s) 191, 457
BtsCI GGATG 4 cut(s) 145, 424, 709, 742
BtsIMutI CAGTG 1 cut(s) 721
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 4 cut(s) 193, 310, 344, 943
CfoI GCGC 1 cut(s) 775
Cfr13I GGNCC 1 cut(s) 563
Csp6I GTAC 2 cut(s) 25, 1025
CviAII CATG 4 cut(s) 227, 710, 770, 902
CviQI GTAC 2 cut(s) 25, 1025
DdeI CTNAG 1 cut(s) 45
DpnI GATC 4 cut(s) 530, 672, 708, 1032
DpnII GATC 4 cut(s) 528, 670, 706, 1030
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 697
Eco32I GATATC 2 cut(s) 234, 476
Eco47I GGWCC 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 1028
Eco81I CCTNAGG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 1 cut(s) 565
EcoRV GATATC 2 cut(s) 234, 476
EcoT14I CCWWGG 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 697
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 4 cut(s) 230, 713, 773, 905
FaqI GGGAC 1 cut(s) 576
FatI CATG 4 cut(s) 226, 709, 769, 901
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 4 cut(s) 153, 340, 864, 924
FokI GGATG 4 cut(s) 152, 411, 716, 749
Fsp4HI GCNGC 4 cut(s) 153, 340, 864, 924
FspBI CTAG 2 cut(s) 471, 650
GlaI GCGC 1 cut(s) 774
GluI GCNGC 4 cut(s) 153, 340, 864, 924
GsaI CCCAGC 3 cut(s) 563, 882, 1010
HaeIII GGCC 2 cut(s) 191, 457
HapII CCGG 3 cut(s) 78, 632, 841
HhaI GCGC 1 cut(s) 775
Hin1II CATG 4 cut(s) 230, 713, 773, 905
Hin6I GCGC 1 cut(s) 773
HinP1I GCGC 1 cut(s) 773
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 4 cut(s) 8, 83, 159, 1040
HinfI GANTC 1 cut(s) 544
HpaII CCGG 3 cut(s) 78, 632, 841
HphI GGTGA 5 cut(s) 155, 343, 377, 593, 680
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 5 cut(s) 238, 322, 436, 835, 870
Hpy188III TCNNGA 3 cut(s) 18, 479, 889
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 4 cut(s) 15, 140, 244, 906
HpyCH4III ACNGT 4 cut(s) 91, 259, 606, 668
HpyCH4V TGCA 6 cut(s) 105, 308, 342, 724, 926, 941
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 4 cut(s) 230, 713, 773, 905
HspAI GCGC 1 cut(s) 773
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 4 cut(s) 528, 670, 706, 1030
LguI GCTCTTC 1 cut(s) 353
LmnI GCTCC 2 cut(s) 149, 535
Lsp1109I GCAGC 4 cut(s) 164, 326, 850, 910
LweI GCATC 2 cut(s) 367, 882
MaeI CTAG 2 cut(s) 471, 650
MaeIII GTNAC 4 cut(s) 50, 401, 600, 847
MalI GATC 4 cut(s) 530, 672, 708, 1032
MboI GATC 4 cut(s) 528, 670, 706, 1030
MboII GAAGA 2 cut(s) 340, 538
MflI RGATCY 1 cut(s) 528
MluCI AATT 7 cut(s) 200, 219, 241, 370, 613, 797, 853
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 9 cut(s) 40, 108, 181, 292, 323, 419, 430, 438, 504
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 4 cut(s) 222, 644, 783, 1038
MslI CAYNNNNRTG 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 363, 878
MspI CCGG 3 cut(s) 78, 632, 841
MspR9I CCNGG 4 cut(s) 78, 567, 632, 842
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 3 cut(s) 78, 632, 842
NdeII GATC 4 cut(s) 528, 670, 706, 1030
NlaIII CATG 4 cut(s) 230, 713, 773, 905
NlaIV GGNNCC 3 cut(s) 384, 564, 636
NmuCI GTSAC 2 cut(s) 401, 847
NspI RCATGY 1 cut(s) 773
PciSI GCTCTTC 1 cut(s) 353
PctI GAATGC 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 387
PkrI GCNGC 4 cut(s) 154, 341, 865, 925
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
PpuMI RGGWCCY 1 cut(s) 563
PsiI TTATAA 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 565
PspFI CCCAGC 3 cut(s) 559, 878, 1006
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 3 cut(s) 384, 564, 636
PspPI GGNCC 1 cut(s) 563
PspPPI RGGWCCY 1 cut(s) 563
PstI CTGCAG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 528
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 2 cut(s) 26, 1026
RsaNI GTAC 2 cut(s) 25, 1025
RseI CAYNNNNRTG 1 cut(s) 714
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 4 cut(s) 222, 644, 783, 1038
SatI GCNGC 4 cut(s) 153, 340, 864, 924
Sau3AI GATC 4 cut(s) 528, 670, 706, 1030
Sau96I GGNCC 1 cut(s) 563
ScaI AGTACT 1 cut(s) 1026
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 4 cut(s) 78, 567, 632, 842
SfaNI GCATC 2 cut(s) 367, 882
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 2 cut(s) 185, 731
SmoI CTYRAG 2 cut(s) 185, 731
Sse9I AATT 7 cut(s) 200, 219, 241, 370, 613, 797, 853
SsiI CCGC 2 cut(s) 363, 380
SspMI CTAG 2 cut(s) 471, 650
StyD4I CCNGG 4 cut(s) 76, 565, 630, 840
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 4 cut(s) 91, 259, 606, 668
TaqI TCGA 2 cut(s) 478, 500
TasI AATT 7 cut(s) 200, 219, 241, 370, 613, 797, 853
TatI WGTACW 1 cut(s) 1024
Tru1I TTAA 4 cut(s) 222, 644, 783, 1038
Tru9I TTAA 4 cut(s) 222, 644, 783, 1038
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 2 cut(s) 401, 847
TseI GCWGC 4 cut(s) 152, 339, 863, 923
Tsp45I GTSAC 2 cut(s) 401, 847
TspDTI ATGAA 1 cut(s) 380
TspRI CASTG 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 4 cut(s) 200, 241, 370, 853
XceI RCATGY 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 471, 650
ZrmI AGTACT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.