RLG00000010120

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000429
Physical Location & Seq
Reverse (-)
63213131 .. 63213663
533 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010120

Sequence Viewer

Length: 450 bp
ATGGATGTATTCAGGGAGTTTTTTGCTCTGCCTCCAGAGGACAAGGCAAGCTTCTTCTCTGAGGACCCTAACAAACTCTGCAGGCTCATAACTAGCACCAGAAATTATGATAGGGAGAATGTTCATCTTTGGCGGGATGCCCTCCGGCACCCTTGTCATCCTCTAGATAAATTCATTCCACTTTGGCCTCAGCAACTGCTTAAATATCGAGAGCATGTTGGCAAATGTTCCACCCAAGTGAGGAAAGTAGCTGTGAACATTTTGGAGTTGATCAGTGAAGGACTTGGGATTGAATATGGGCACTTCAGTGATGAACTTAGCCAAGAGACTGTACTCTCAGTTAATTATTATCCACCTTGCCCAGATCCATGTTTGACATTAGGAATAACTAAACACTGTGACCCAAATCTCATCACAATTTTACTTCAAGGGGATGTACATGGCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

150

Amino Acids

17.17

Weight (kDa)

5.76

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 110 - 149 9.5e-10 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 147
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 289
AfaI GTAC 2 cut(s) 333, 438
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 293, 428
AleI CACNNNNGTG 2 cut(s) 236, 306
AluBI AGCT 2 cut(s) 51, 251
AluI AGCT 2 cut(s) 51, 251
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 2 cut(s) 185, 442
ApoI RAATTY 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 189
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 2 cut(s) 93, 164
BfmI CTRYAG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 66, 149
BmsI GCATC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseGI GGATG 4 cut(s) 10, 142, 157, 439
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 3 cut(s) 51, 203, 351
BseSI GKGCMC 1 cut(s) 303
BshFI GGCC 2 cut(s) 187, 444
BshNI GGYRCC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 2 cut(s) 187, 444
Bsp1286I GDGCHC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 436
Bsp143I GATC 2 cut(s) 270, 364
BspACI CCGC 1 cut(s) 133
BspANI GGCC 2 cut(s) 187, 444
BspCNI CTCAG 3 cut(s) 52, 202, 350
BspLI GGNNCC 2 cut(s) 66, 149
BspMAI CTGCAG 1 cut(s) 83
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 436
BssMI GATC 2 cut(s) 270, 364
Bst4CI ACNGT 2 cut(s) 331, 398
BstAUI TGTACA 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 49, 83
BstDEI CTNAG 4 cut(s) 60, 189, 317, 337
BstF5I GGATG 4 cut(s) 10, 142, 157, 439
BstKTI GATC 2 cut(s) 273, 367
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 2 cut(s) 270, 364
BstNSI RCATGY 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 2 cut(s) 187, 444
BtsCI GGATG 4 cut(s) 10, 142, 157, 439
BtsIMutI CAGTG 3 cut(s) 280, 313, 394
Cac8I GCNNGC 2 cut(s) 49, 83
CaiI CAGNNNCTG 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 332, 437
CviAII CATG 3 cut(s) 215, 369, 440
CviJI RGCY 6 cut(s) 51, 85, 187, 251, 321, 444
CviKI_1 RGCY 6 cut(s) 51, 85, 187, 251, 321, 444
CviQI GTAC 2 cut(s) 332, 437
DdeI CTNAG 4 cut(s) 60, 189, 317, 337
DpnI GATC 2 cut(s) 272, 366
DpnII GATC 2 cut(s) 270, 364
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 64
FaeI CATG 3 cut(s) 218, 372, 443
FaiI YATR 6 cut(s) 89, 108, 216, 297, 370, 441
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 3 cut(s) 214, 368, 439
FauI CCCGC 1 cut(s) 126
FbaI TGATCA 1 cut(s) 270
FokI GGATG 4 cut(s) 17, 144, 149, 446
FspBI CTAG 2 cut(s) 93, 164
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 187, 444
HapII CCGG 1 cut(s) 145
Hin1II CATG 3 cut(s) 218, 372, 443
HindIII AAGCTT 1 cut(s) 49
HpaII CCGG 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 35, 164, 209
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 2 cut(s) 331, 398
HpyCH4V TGCA 1 cut(s) 81
HpyF3I CTNAG 4 cut(s) 60, 189, 317, 337
Hsp92II CATG 3 cut(s) 218, 372, 443
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 2 cut(s) 270, 364
LpnPI CCDG 5 cut(s) 48, 67, 112, 158, 375
LweI GCATC 1 cut(s) 127
MaeI CTAG 2 cut(s) 93, 164
MaeIII GTNAC 1 cut(s) 398
MalI GATC 2 cut(s) 272, 366
MboI GATC 2 cut(s) 270, 364
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 4 cut(s) 103, 170, 343, 417
MnlI CCTC 7 cut(s) 31, 42, 55, 152, 171, 198, 234
MseI TTAA 2 cut(s) 201, 342
MslI CAYNNNNRTG 2 cut(s) 236, 306
MspI CCGG 1 cut(s) 145
NdeII GATC 2 cut(s) 270, 364
NlaIII CATG 3 cut(s) 218, 372, 443
NlaIV GGNNCC 2 cut(s) 66, 149
NmuCI GTSAC 1 cut(s) 398
NspI RCATGY 1 cut(s) 218
OliI CACNNNNGTG 2 cut(s) 236, 306
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 66, 149
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
PstI CTGCAG 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 2 cut(s) 333, 438
RsaNI GTAC 2 cut(s) 332, 437
RseI CAYNNNNRTG 2 cut(s) 236, 306
SaqAI TTAA 2 cut(s) 201, 342
Sau3AI GATC 2 cut(s) 270, 364
Sau96I GGNCC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 303
SetI ASST 3 cut(s) 53, 253, 358
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 236, 306
Sse9I AATT 4 cut(s) 103, 170, 343, 417
SsiI CCGC 1 cut(s) 133
SspMI CTAG 2 cut(s) 93, 164
TaaI ACNGT 2 cut(s) 331, 398
TaqI TCGA 1 cut(s) 208
TasI AATT 4 cut(s) 103, 170, 343, 417
TatI WGTACW 2 cut(s) 331, 436
Tru1I TTAA 2 cut(s) 201, 342
Tru9I TTAA 2 cut(s) 201, 342
TscAI CASTG 3 cut(s) 280, 313, 401
TseFI GTSAC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 3 cut(s) 113, 163, 327
TspRI CASTG 3 cut(s) 280, 313, 401
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 1 cut(s) 218
XspI CTAG 2 cut(s) 93, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.