FvH4_2g21630

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000429
Physical Location & Seq
Forward (+)
17946523 .. 17948666
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21630.t3

Sequence Viewer

Length: 1035 bp
ATGGAGAAGCTTGTTCCAAACTGGTACAGTGCTGCCCAACCCTTGCCTGAGACTTACATATTCCCACCTGATGTAAGACCAGGGAAGTTCAGCATTGCTCCTTCATCCAAGGACATTCCAGTGATTGATTTAGGATCACAATCACAAAGTCATGATCGAGCTCATGTGATCCAACAAATACTTGAGGCTAGCCAAGAATTTGGATTTTTTCAGGTAATCAACCATGGCATACCAGAAGCTTTGATGAATGACACAATGGATGTGTTCAAGGAGTTCTTTGAGCTGCCTCTAGAGGAAAAGAGGGCAAGCATCCACTCTGACGACCCCAACAAACTCTGCAAGCTCATACACAGCAGTGTTAATTATGATTGGGAGGAAGCTCATCTTTGGCGCGATTTTATTCGACACCCTTGTGAACCTTTAGAGAAATTCACGCCAATTTGGCCTCGGAAACCGACTAAATACCGAGAGCATGTCAGCAAATGTTTCATCCAAGTGAAGAAAGTGGCTTTGGACATTTTGGAGTTGATCGGTGAAGGACTAGGGATAGGATCAGAGTATTTCAGTGATGAACTTAGCAAAGAGACTGACATATTTGTTAATCACTATCCACCTTGTCCGGACCCAAGTTTGACACTAGGAATAACCAAACATTCTGACCCACAGCTCATCACCATTTTACTTCAAGGGGATGTCAGTGGCCTTCAAGTGTTCAAGGACGGGGAATGGATTGGAGTGGAACCTATTGCAAATGGATTGGTGGTTAACATAGGCTATCAATTAAGGATCATTAGTAATGGAAAGCTCAAGTGTGCTGAACATCGAGTAGTGACGAATTCAAGTACTGTTCGGACGACGATTGGATTTTTCATTACACCCTCCCCTGATTGCTTTATAGAACCTGCAGCAGCTCTTATTAATGCAAGCAATCCCCGACTCTACAGAGGCTTCCGATACGAAGAGTTTCGTGCAAACTACTTCAAAAAGCAGGGAAAAACCGAAGTTGTGCTCGAGCCTTTTAAAATCGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

345

Amino Acids

39.12

Weight (kDa)

5.61

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 117 - 212 1.8e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 910
AccII CGCG 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 619
AclWI GGATC 4 cut(s) 142, 163, 559, 794
AcsI RAATTY 3 cut(s) 197, 428, 835
AfaI GTAC 2 cut(s) 26, 844
AgsI TTSAA 6 cut(s) 268, 686, 707, 715, 840, 982
AjnI CCWGG 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AleI CACNNNNGTG 2 cut(s) 354, 411
AluBI AGCT 9 cut(s) 10, 161, 239, 283, 343, 380, 667, 805, 911
AluI AGCT 9 cut(s) 10, 161, 239, 283, 343, 380, 667, 805, 911
Alw21I GWGCWC 2 cut(s) 163, 1011
Alw26I GTCTC 2 cut(s) 44, 578
AlwI GGATC 4 cut(s) 142, 163, 559, 794
Ama87I CYCGRG 1 cut(s) 1010
Aor13HI TCCGGA 1 cut(s) 619
AoxI GGCC 2 cut(s) 443, 700
ApeKI GCWGC 4 cut(s) 32, 283, 905, 908
ApoI RAATTY 3 cut(s) 197, 428, 835
AseI ATTAAT 1 cut(s) 918
Asp700I GAANNNNTTC 1 cut(s) 963
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 622
AsuHPI GGTGA 2 cut(s) 545, 664
AsuNHI GCTAGC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 1010
AvaII GGWCC 1 cut(s) 622
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 163, 1011
BbvI GCAGC 4 cut(s) 19, 270, 917, 920
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 44, 578
BfaI CTAG 4 cut(s) 189, 290, 542, 638
BfmI CTRYAG 2 cut(s) 903, 940
BfuAI ACCTGC 1 cut(s) 910
BglI GCCNNNNNGGC 1 cut(s) 442
BisI GCNGC 4 cut(s) 33, 284, 906, 909
BlsI GCNGC 4 cut(s) 34, 285, 907, 910
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 1010
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 2 cut(s) 624, 741
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 318
BmtI GCTAGC 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 203, 791
BsaBI GATNNNNATC 1 cut(s) 139
BsaJI CCNNGG 4 cut(s) 80, 108, 223, 446
BsaWI WCCGGW 1 cut(s) 619
Bse1I ACTGG 2 cut(s) 26, 119
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 619
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 4 cut(s) 80, 108, 223, 446
BseGI GGATG 5 cut(s) 104, 265, 309, 489, 697
BseJI GATNNNNATC 1 cut(s) 139
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 26, 119
BseXI GCAGC 4 cut(s) 19, 270, 917, 920
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 2 cut(s) 445, 702
BsiHKAI GWGCWC 2 cut(s) 163, 1011
BsiHKCI CYCGRG 1 cut(s) 1010
BsiSI CCGG 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 44, 578
BsnI GGCC 2 cut(s) 445, 702
BsoBI CYCGRG 1 cut(s) 1010
Bsp1286I GDGCHC 2 cut(s) 163, 1011
Bsp13I TCCGGA 1 cut(s) 619
Bsp143I GATC 6 cut(s) 134, 154, 168, 528, 551, 786
Bsp19I CCATGG 1 cut(s) 223
BspANI GGCC 2 cut(s) 445, 702
BspCNI CTCAG 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 619
BspFNI CGCG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 624, 741
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 1 cut(s) 910
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 4 cut(s) 142, 163, 559, 794
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 26, 119
BssECI CCNNGG 4 cut(s) 80, 108, 223, 446
BssMI GATC 6 cut(s) 134, 154, 168, 528, 551, 786
BssT1I CCWWGG 2 cut(s) 108, 223
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 29, 847
Bst6I CTCTTC 1 cut(s) 954
BstC8I GCNNGC 4 cut(s) 190, 307, 341, 925
BstDEI CTNAG 3 cut(s) 48, 575, 1032
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 5 cut(s) 104, 265, 309, 489, 697
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 6 cut(s) 137, 157, 171, 531, 554, 789
BstMAI GTCTC 2 cut(s) 44, 578
BstMBI GATC 6 cut(s) 134, 154, 168, 528, 551, 786
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 2 cut(s) 903, 940
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 4 cut(s) 19, 270, 917, 920
BstXI CCANNNNNNTGG 1 cut(s) 200
BsuRI GGCC 2 cut(s) 445, 702
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 5 cut(s) 104, 265, 309, 489, 697
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 5 cut(s) 34, 126, 361, 571, 703
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 4 cut(s) 190, 307, 341, 925
CciI TCATGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 622
Csp6I GTAC 2 cut(s) 25, 843
CviAII CATG 4 cut(s) 152, 164, 224, 473
CviQI GTAC 2 cut(s) 25, 843
DdeI CTNAG 3 cut(s) 48, 575, 1032
DpnI GATC 6 cut(s) 136, 156, 170, 530, 553, 788
DpnII GATC 6 cut(s) 134, 154, 168, 528, 551, 786
DraI TTTAAA 1 cut(s) 1021
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 108, 223
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 622
Eco53kI GAGCTC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 1010
EcoICRI GAGCTC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 2 cut(s) 108, 223
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 2 cut(s) 108, 223
FaeI CATG 4 cut(s) 155, 167, 227, 476
FalI AAGNNNNNCTT 4 cut(s) 260, 292, 369, 401
FatI CATG 4 cut(s) 151, 163, 223, 472
Fnu4HI GCNGC 4 cut(s) 33, 284, 906, 909
FokI GGATG 5 cut(s) 91, 272, 296, 476, 704
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 4 cut(s) 33, 284, 906, 909
FspBI CTAG 4 cut(s) 189, 290, 542, 638
GlaI GCGC 1 cut(s) 392
GluI GCNGC 4 cut(s) 33, 284, 906, 909
HaeIII GGCC 2 cut(s) 445, 702
HapII CCGG 1 cut(s) 620
HhaI GCGC 1 cut(s) 393
Hin1II CATG 4 cut(s) 155, 167, 227, 476
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 2 cut(s) 8, 237
HinfI GANTC 2 cut(s) 936, 1028
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 1 cut(s) 620
HphI GGTGA 2 cut(s) 545, 664
Hpy166II GTNNAC 2 cut(s) 416, 766
Hpy188I TCNGA 6 cut(s) 319, 450, 556, 658, 852, 953
Hpy188III TCNNGA 3 cut(s) 152, 290, 620
Hpy8I GTNNAC 2 cut(s) 416, 766
Hpy99I CGWCG 1 cut(s) 859
HpyAV CCTTC 3 cut(s) 111, 530, 713
HpyCH4III ACNGT 2 cut(s) 29, 847
HpyCH4V TGCA 5 cut(s) 339, 749, 905, 923, 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpyF3I CTNAG 3 cut(s) 48, 575, 1032
Hsp92II CATG 4 cut(s) 155, 167, 227, 476
HspAI GCGC 1 cut(s) 391
Kpn2I TCCGGA 1 cut(s) 619
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 6 cut(s) 134, 154, 168, 528, 551, 786
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 4 cut(s) 19, 270, 917, 920
LweI GCATC 1 cut(s) 318
MaeI CTAG 4 cut(s) 189, 290, 542, 638
MaeIII GTNAC 1 cut(s) 829
MalI GATC 6 cut(s) 136, 156, 170, 530, 553, 788
MboI GATC 6 cut(s) 134, 154, 168, 528, 551, 786
MboII GAAGA 2 cut(s) 511, 971
MhlI GDGCHC 2 cut(s) 163, 1011
MluCI AATT 6 cut(s) 197, 361, 428, 438, 779, 835
MlyI GAGTC 1 cut(s) 930
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 8 cut(s) 178, 286, 294, 297, 367, 456, 889, 938
MroI TCCGGA 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 963
MseI TTAA 6 cut(s) 360, 600, 765, 782, 918, 1020
MslI CAYNNNNRTG 4 cut(s) 119, 354, 411, 494
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 442
NcoI CCATGG 1 cut(s) 223
NdeII GATC 6 cut(s) 134, 154, 168, 528, 551, 786
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 4 cut(s) 155, 167, 227, 476
NlaIV GGNNCC 2 cut(s) 624, 741
NmuCI GTSAC 1 cut(s) 829
NspI RCATGY 1 cut(s) 476
OliI CACNNNNGTG 2 cut(s) 354, 411
PaeR7I CTCGAG 1 cut(s) 1010
PagI TCATGA 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 1 cut(s) 1028
PkrI GCNGC 4 cut(s) 34, 285, 907, 910
PleI GAGTC 1 cut(s) 930
PpsI GAGTC 1 cut(s) 930
PshBI ATTAAT 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 624, 741
PspPI GGNCC 1 cut(s) 622
PspXI VCTCGAGB 1 cut(s) 1010
PstI CTGCAG 1 cut(s) 907
RsaI GTAC 2 cut(s) 26, 844
RsaNI GTAC 2 cut(s) 25, 843
RseI CAYNNNNRTG 4 cut(s) 119, 354, 411, 494
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 6 cut(s) 360, 600, 765, 782, 918, 1020
SatI GCNGC 4 cut(s) 33, 284, 906, 909
Sau3AI GATC 6 cut(s) 134, 154, 168, 528, 551, 786
Sau96I GGNCC 1 cut(s) 622
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 163, 1011
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 2 cut(s) 903, 940
Sfr274I CTCGAG 1 cut(s) 1010
SinI GGWCC 1 cut(s) 622
SlaI CTCGAG 1 cut(s) 1010
SmiMI CAYNNNNRTG 4 cut(s) 119, 354, 411, 494
SmlI CTYRAG 3 cut(s) 182, 806, 1010
SmoI CTYRAG 3 cut(s) 182, 806, 1010
Sse9I AATT 6 cut(s) 197, 361, 428, 438, 779, 835
SspMI CTAG 4 cut(s) 189, 290, 542, 638
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 2 cut(s) 108, 223
TaaI ACNGT 2 cut(s) 29, 847
TaqI TCGA 5 cut(s) 157, 403, 823, 1011, 1026
TasI AATT 6 cut(s) 197, 361, 428, 438, 779, 835
TatI WGTACW 1 cut(s) 842
TfiI GAWTC 1 cut(s) 1028
Tru1I TTAA 6 cut(s) 360, 600, 765, 782, 918, 1020
Tru9I TTAA 6 cut(s) 360, 600, 765, 782, 918, 1020
TscAI CASTG 5 cut(s) 34, 126, 361, 571, 703
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 4 cut(s) 32, 283, 905, 908
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 5 cut(s) 93, 260, 478, 585, 859
TspRI CASTG 5 cut(s) 34, 126, 361, 571, 703
VpaK11BI GGWCC 1 cut(s) 622
VspI ATTAAT 1 cut(s) 918
XapI RAATTY 3 cut(s) 197, 428, 835
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 1 cut(s) 476
XhoI CTCGAG 1 cut(s) 1010
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 4 cut(s) 189, 290, 542, 638
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.