Rh6DG305500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000429
Physical Location & Seq
Forward (+)
50555594 .. 50560899
5306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG305500.1

Sequence Viewer

Length: 792 bp
ATGAATGACACAATGGATGTGTTCAAGGAGTTCTTTGAGTTGCCTCTAGAGGAAAAGAGGGCAAGCATCTACTCTGATGACCCCAACAAAGTCTGCAAGCTCGTACATAGCAGTGTTAATTATGACTGGGAGGAAGTTCATCTTTGGCGCGATTTCCTCCGACACCCTTGTGAACCTTTAGAAAAATTCATGCCAATTTGGCCTCGGAAACCGATTAAATATCGAGAGCATGTTAGCAAATGTTTCACTCAAGTGAAGAAAGTGGCTTTGGACATTTTGGAGTTGATCGGTGAAGGACTTGGGATAGGATCAGAGTATTTCAATGATGAACTTAGCAAAGAGACTGACATCTTTGTTAATCACTATCCACCTTGTCCTGACCCAAGTTTGACACTTGGAATAACTAAACACTCTGACCCACAGCTGATCACAATTTTACTTCAAGGGGATGTCAGTGGCCTTCAAGTTCTCAAGGATGGGGAATGGATTGGAGTGGAACCTATTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTAGTAATGGAAAGCTCAAGTGTGCTGAACATCGAGTGGTGACGAATTCAAGTACTGTTCGGACGACGATTGGATTTTTCATTACACCCTCCCCTGACTGCTATATAGAACCTGCAGCAGCTCTTATTCATGCAAGCAATCCCCGACTCTATAAAGGCTTCCGATATGAAGAGTTTCGTGCCAACTACTTTAGGAAGCAGGGGAAAACCGAAGTTGTGCTTGAACCCTTCAAAATCGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

263

Amino Acids

30.21

Weight (kDa)

5.8

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 117 - 212 4.4e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 667
AccII CGCG 1 cut(s) 150
AclWI GGATC 2 cut(s) 316, 551
AcsI RAATTY 2 cut(s) 185, 592
AfaI GTAC 2 cut(s) 105, 601
AgsI TTSAA 8 cut(s) 25, 322, 443, 464, 507, 597, 770, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AleI CACNNNNGTG 2 cut(s) 168, 251
AluBI AGCT 4 cut(s) 100, 424, 562, 668
AluI AGCT 4 cut(s) 100, 424, 562, 668
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 2 cut(s) 316, 551
AoxI GGCC 2 cut(s) 200, 457
ApeKI GCWGC 2 cut(s) 662, 665
ApoI RAATTY 2 cut(s) 185, 592
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 302, 598
BbvI GCAGC 2 cut(s) 674, 677
BccI CCATC 1 cut(s) 470
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 660
BfuAI ACCTGC 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 199
BisI GCNGC 2 cut(s) 663, 666
BlsI GCNGC 2 cut(s) 664, 667
BmcAI AGTACT 1 cut(s) 601
BmiI GGNNCC 1 cut(s) 498
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 136
BpuEI CTTGAG 3 cut(s) 234, 455, 548
BsaJI CCNNGG 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 131, 519
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 3 cut(s) 22, 454, 481
BseNI ACTGG 2 cut(s) 131, 519
BseXI GCAGC 2 cut(s) 674, 677
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 202, 459
BsmAI GTCTC 1 cut(s) 335
BsnI GGCC 2 cut(s) 202, 459
Bsp143I GATC 4 cut(s) 285, 308, 426, 543
BspANI GGCC 2 cut(s) 202, 459
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 498
BspMAI CTGCAG 1 cut(s) 664
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 2 cut(s) 316, 551
BsrI ACTGG 2 cut(s) 131, 519
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 4 cut(s) 285, 308, 426, 543
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 64, 98, 682
BstDEI CTNAG 2 cut(s) 332, 789
BstF5I GGATG 3 cut(s) 22, 454, 481
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 4 cut(s) 288, 311, 429, 546
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 285, 308, 426, 543
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 660
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 674, 677
BsuRI GGCC 2 cut(s) 202, 459
BtsCI GGATG 3 cut(s) 22, 454, 481
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 460
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 3 cut(s) 64, 98, 682
CfoI GCGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 104, 600
CviAII CATG 3 cut(s) 190, 230, 677
CviJI RGCY 9 cut(s) 100, 202, 266, 424, 459, 531, 562, 668, 705
CviKI_1 RGCY 9 cut(s) 100, 202, 266, 424, 459, 531, 562, 668, 705
CviQI GTAC 2 cut(s) 104, 600
DdeI CTNAG 2 cut(s) 332, 789
DpnI GATC 4 cut(s) 287, 310, 428, 545
DpnII GATC 4 cut(s) 285, 308, 426, 543
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 592
FaeI CATG 3 cut(s) 193, 233, 680
FalI AAGNNNNNCTT 6 cut(s) 17, 49, 126, 158, 750, 782
FatI CATG 3 cut(s) 189, 229, 676
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 663, 666
FokI GGATG 3 cut(s) 29, 461, 488
Fsp4HI GCNGC 2 cut(s) 663, 666
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 149
GluI GCNGC 2 cut(s) 663, 666
HaeIII GGCC 2 cut(s) 202, 459
HhaI GCGC 1 cut(s) 150
Hin1II CATG 3 cut(s) 193, 233, 680
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 2 cut(s) 693, 785
HpaI GTTAAC 1 cut(s) 523
HphI GGTGA 2 cut(s) 302, 598
Hpy166II GTNNAC 2 cut(s) 173, 523
Hpy188I TCNGA 7 cut(s) 76, 161, 207, 313, 415, 609, 710
Hpy188III TCNNGA 3 cut(s) 47, 224, 377
Hpy8I GTNNAC 2 cut(s) 173, 523
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 3 cut(s) 287, 470, 784
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4V TGCA 3 cut(s) 96, 662, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 332, 789
Hsp92II CATG 3 cut(s) 193, 233, 680
HspAI GCGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 426
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 4 cut(s) 285, 308, 426, 543
LpnPI CCDG 6 cut(s) 112, 390, 500, 654, 672, 731
Lsp1109I GCAGC 2 cut(s) 674, 677
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 586
MalI GATC 4 cut(s) 287, 310, 428, 545
MboI GATC 4 cut(s) 285, 308, 426, 543
MboII GAAGA 2 cut(s) 268, 728
MluCI AATT 6 cut(s) 118, 185, 195, 432, 536, 592
MlyI GAGTC 1 cut(s) 687
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 7 cut(s) 43, 51, 54, 124, 167, 213, 646
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 4 cut(s) 117, 216, 357, 522
MslI CAYNNNNRTG 3 cut(s) 111, 168, 251
MspA1I CMGCKG 1 cut(s) 424
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 4 cut(s) 285, 308, 426, 543
NlaIII CATG 3 cut(s) 193, 233, 680
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 1 cut(s) 233
OliI CACNNNNGTG 2 cut(s) 168, 251
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 1 cut(s) 785
PkrI GCNGC 2 cut(s) 664, 667
PleI GAGTC 1 cut(s) 687
PpsI GAGTC 1 cut(s) 687
PspN4I GGNNCC 1 cut(s) 498
PstI CTGCAG 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 2 cut(s) 105, 601
RsaNI GTAC 2 cut(s) 104, 600
RseI CAYNNNNRTG 3 cut(s) 111, 168, 251
SaqAI TTAA 4 cut(s) 117, 216, 357, 522
SatI GCNGC 2 cut(s) 663, 666
Sau3AI GATC 4 cut(s) 285, 308, 426, 543
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 1 cut(s) 687
SetI ASST 8 cut(s) 102, 178, 373, 426, 502, 564, 661, 670
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 660
SmiMI CAYNNNNRTG 3 cut(s) 111, 168, 251
SmlI CTYRAG 3 cut(s) 249, 470, 563
SmoI CTYRAG 3 cut(s) 249, 470, 563
Sse9I AATT 6 cut(s) 118, 185, 195, 432, 536, 592
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 604
TaqI TCGA 3 cut(s) 223, 580, 783
TasI AATT 6 cut(s) 118, 185, 195, 432, 536, 592
TatI WGTACW 1 cut(s) 599
TfiI GAWTC 1 cut(s) 785
Tru1I TTAA 4 cut(s) 117, 216, 357, 522
Tru9I TTAA 4 cut(s) 117, 216, 357, 522
TscAI CASTG 2 cut(s) 118, 460
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 2 cut(s) 662, 665
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 7 cut(s) 17, 128, 178, 342, 616, 665, 729
TspGWI ACGGA 1 cut(s) 556
TspRI CASTG 2 cut(s) 118, 460
XapI RAATTY 2 cut(s) 185, 592
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.