MD10G1189600.v1.1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000429
Physical Location & Seq
Forward (+)
28637839 .. 28638574
736 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1189600.v1.1.491

Sequence Viewer

Length: 504 bp
ATGAAAGTTTTGGAGCTAATAAGTGAAGGACTTGGGCTTGGAACTGCATATTTTAGGGATGAACTTTGCCATAATGTGACACTCACAGTTAATCATTACTTGCCTTGCTTGGACCCAAGTTTGACATTAGGTATGCCTAAACATTGTGATCCAAACCTCATAACCATTTTACTTCAAGAAGGTCATGTAAATGGACTTCAAGTTTTCAAAGACGGGGAAAGGATCAGTGTGGAGCCTATTTCACAAGCATTGGTGGTTAACATTGGCCATCAGCTACAGATTATCAGTAATGGGAAGCTGAAAAGTGCTGAACATCGGGCGGTGACGAGTTCAAGCCATTCCAGGACATCTACTGCATTTTTCATCGCGCCTTCAGACGATTGCATTGTAGAACCTGCGGAAGCTCTTATTAGTGCAAGCAATCCACAACACTATAAACCCTTTCAATATAAAGAGTTCTTTATCAACTATGTTATGAAGCAGGGTAAAACCGAAGTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

168

Amino Acids

18.56

Weight (kDa)

6.03

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 28 - 124 1.8e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AccII CGCG 1 cut(s) 368
AciI CCGC 2 cut(s) 320, 398
AclWI GGATC 2 cut(s) 143, 230
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 357
AgsI TTSAA 5 cut(s) 176, 200, 208, 333, 446
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 4 cut(s) 16, 274, 298, 404
AluI AGCT 4 cut(s) 16, 274, 298, 404
AlwI GGATC 2 cut(s) 143, 230
AoxI GGCC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 267
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BccI CCATC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 343
BfaI CTAG 1 cut(s) 502
BfmI CTRYAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 114, 234
BmrFI CCNGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 267
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 148, 222
BspACI CCGC 2 cut(s) 320, 398
BspANI GGCC 1 cut(s) 267
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 2 cut(s) 114, 234
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 143, 230
BssMI GATC 2 cut(s) 148, 222
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 418
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 368
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 2 cut(s) 151, 225
BstMBI GATC 2 cut(s) 148, 222
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 275
BstUI CGCG 1 cut(s) 368
BsuRI GGCC 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 418
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 1 cut(s) 185
CviJI RGCY 8 cut(s) 16, 37, 235, 267, 274, 298, 336, 404
CviKI_1 RGCY 8 cut(s) 16, 37, 235, 267, 274, 298, 336, 404
DpnI GATC 2 cut(s) 150, 224
DpnII GATC 2 cut(s) 148, 222
EaeI YGGCCR 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 341
FaeI CATG 1 cut(s) 188
FaiI YATR 9 cut(s) 49, 72, 134, 161, 186, 435, 450, 471, 476
FatI CATG 1 cut(s) 184
FokI GGATG 1 cut(s) 71
FspBI CTAG 1 cut(s) 502
GlaI GCGC 1 cut(s) 369
HaeIII GGCC 1 cut(s) 267
HhaI GCGC 1 cut(s) 370
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HpaI GTTAAC 1 cut(s) 259
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 259, 499
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 2 cut(s) 259, 499
HpyAV CCTTC 3 cut(s) 20, 173, 381
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 4 cut(s) 47, 356, 384, 416
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 368
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 148, 222
LmnI GCTCC 2 cut(s) 13, 232
LpnPI CCDG 4 cut(s) 328, 355, 408, 467
MaeI CTAG 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 76, 322
MalI GATC 2 cut(s) 150, 224
MboI GATC 2 cut(s) 148, 222
MlsI TGGCCA 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 267
MnlI CCTC 1 cut(s) 167
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 2 cut(s) 90, 258
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 1 cut(s) 368
NdeII GATC 2 cut(s) 148, 222
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 2 cut(s) 114, 234
NmuCI GTSAC 2 cut(s) 76, 322
PfoI TCCNGGA 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 114, 234
PspPI GGNCC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 2 cut(s) 90, 258
Sau3AI GATC 2 cut(s) 148, 222
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 343
SetI ASST 8 cut(s) 18, 133, 159, 184, 276, 300, 397, 406
SfcI CTRYAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 189
SsiI CCGC 2 cut(s) 320, 398
SspMI CTAG 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 88
Tru1I TTAA 2 cut(s) 90, 258
Tru9I TTAA 2 cut(s) 90, 258
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 2 cut(s) 76, 322
Tsp45I GTSAC 2 cut(s) 76, 322
TspDTI ATGAA 4 cut(s) 17, 75, 352, 491
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 112
XspI CTAG 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.