Rw6G026640

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000429
Physical Location & Seq
Forward (+)
50065145 .. 50065761
617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G026640.1

Sequence Viewer

Length: 354 bp
ATGGAGAAGCTCATCTCTAATAGAAGTGACTTGCAATCTGTACAGGAATCTTACATATTACCTCCCGGAACTAGACCTCGGAATAAACAATTGAGTTTCTACAAGTTGGCTAATCACAGAGTTCCACACAACTTGCTGCATAATATAATGAATGTTAGTAAGGAGTTCTTTGAGCTACCTTGTGAAGACAAAGCAAGCATCTATTCTGAAGAAGGCAAGAAAAATCGTAGATTATACACTAGCATTGACTACATGAGAGAGAAGGAACTAGGCCAGGCAATACACAGGTCTCTGTATTGGAGGTCATTCCAGTCATTGATTTTCAGCAACTTGGTACCAACAGTCGTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

117

Amino Acids

13.8

Weight (kDa)

9.48

Isoelectric Point (pI)

70.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 31 - 100 2.9e-09 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 2 cut(s) 42, 336
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 10, 175, 351
AluI AGCT 3 cut(s) 10, 175, 351
Alw26I GTCTC 1 cut(s) 294
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 136
Asp718I GGTACC 1 cut(s) 334
AsuC2I CCSGG 1 cut(s) 66
BanI GGYRCC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 3 cut(s) 72, 240, 269
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 2 cut(s) 66, 275
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 66, 275
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 123
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 40
BspANI GGCC 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 40
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 294
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 64, 273
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 41, 335
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 1 cut(s) 253
CviJI RGCY 5 cut(s) 10, 110, 175, 273, 351
CviKI_1 RGCY 5 cut(s) 10, 110, 175, 273, 351
CviQI GTAC 2 cut(s) 41, 335
Eco31I GGTCTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 56, 141, 146, 235, 254
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 3 cut(s) 72, 240, 269
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 273
HapII CCGG 1 cut(s) 66
Hin1II CATG 1 cut(s) 256
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 81, 208
HpyAV CCTTC 2 cut(s) 206, 256
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 2 cut(s) 34, 139
Hsp92II CATG 1 cut(s) 256
KpnI GGTACC 1 cut(s) 338
LpnPI CCDG 6 cut(s) 29, 79, 260, 271, 287, 323
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 207
MaeI CTAG 3 cut(s) 72, 240, 269
MaeIII GTNAC 1 cut(s) 26
MboII GAAGA 2 cut(s) 197, 221
MfeI CAATTG 1 cut(s) 89
MluCI AATT 1 cut(s) 89
MnlI CCTC 3 cut(s) 72, 87, 294
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 66, 275
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 275
NciI CCSGG 1 cut(s) 66
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 47
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 351
RsaI GTAC 2 cut(s) 42, 336
RsaNI GTAC 2 cut(s) 41, 335
SatI GCNGC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 66, 275
SetI ASST 8 cut(s) 12, 64, 79, 177, 181, 290, 305, 353
SfaNI GCATC 1 cut(s) 207
Sse9I AATT 1 cut(s) 89
SspMI CTAG 3 cut(s) 72, 240, 269
StyD4I CCNGG 2 cut(s) 64, 273
TaaI ACNGT 1 cut(s) 343
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 1 cut(s) 47
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 164
XspI CTAG 3 cut(s) 72, 240, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.