Rh7BG096700

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000429
Physical Location & Seq
Forward (+)
7137407 .. 7140123
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG096700.1

Sequence Viewer

Length: 834 bp
ATGGGGAACAGCGCCGTTGAGCAGCACCTCAAATTGGACTCACAGGTTTCTCGCACTTCTTCTCCTGCTGTTGCTGAGAATTTGCAAAAATCTGTTCAGAGTAGTGCTAGTGTTGAATTCGGATTCTTTCAGGTAATCAACCATGGCATACCAGAAGCTTTGATGAATGACACAATGGATGTGCTCAAGGAGTTCTTTGAGTTGCCTCTAGAGGAAAAGAGGGCAAGCATGTACTCTGATGACCCCAACAAAGACTGCAAGCTCGTACATAGCAGTGTTAATTATGATTGGGAGGAAGTTCATCTTTGGCGTGATTTAATCCGACACCCTTGTGAACCTTTAGAGAAATTCATGCCAATTTGGCCCCGGAAACCGATTAAATATCGAGAGCATGTTAGCAAGTGTTTCATCCAAAGTCCAGACCCAAGTTTGACGCTAGGAATAACTAAACACTCTGACCCACAGCTCATCACAATTTTACATCAAGGGGATGTCAGTGGCCTTCAAGTTTTCAAGGATGGGGAATGGATTGGAGTGGAACCTATTTCAAATGGACTGGTGGTTAACATAGGCTATCAATTACGGATCATTAGTAATGGAAAGCTCAAGTGTGATGAACATCAAGTAGTGACAAATTCAAGTACTGTTCGGACGACGTTTGGATTTTTCATCACACCCTCCCCTGATTGCTATATAGAACCTGCAGCAGCTCTTATTAATGCAAGCAATCCCCAACTCTATAAAGGCTTCCGATATGAAGAGTTTCGTGCCAACTACTTTAGGAAGCAGGGGAAAACCGAAGCTGTGCTTGAACCCTTTAAAATCGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

277

Amino Acids

31.51

Weight (kDa)

5.74

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 35 - 122 8.8e-17 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 138 - 226 3.5e-23 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 709
AclWI GGATC 1 cut(s) 593
AcsI RAATTY 4 cut(s) 79, 116, 347, 634
AfaI GTAC 3 cut(s) 233, 267, 643
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 6 cut(s) 116, 506, 514, 549, 639, 812
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 6 cut(s) 158, 262, 466, 604, 710, 803
AluI AGCT 6 cut(s) 158, 262, 466, 604, 710, 803
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 1 cut(s) 593
AoxI GGCC 2 cut(s) 362, 499
ApeKI GCWGC 3 cut(s) 22, 704, 707
ApoI RAATTY 4 cut(s) 79, 116, 347, 634
AseI ATTAAT 1 cut(s) 717
Asp700I GAANNNNTTC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 3 cut(s) 34, 716, 719
BccI CCATC 1 cut(s) 512
BcnI CCSGG 1 cut(s) 367
BfaI CTAG 3 cut(s) 108, 209, 437
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 709
BglI GCCNNNNNGGC 1 cut(s) 361
BisI GCNGC 3 cut(s) 23, 705, 708
BlsI GCNGC 3 cut(s) 24, 706, 709
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 2 cut(s) 365, 540
BmrFI CCNGG 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 170, 590
BpuMI CCSGG 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 142, 365
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 561
Bse8I GATNNNNATC 1 cut(s) 618
BseDI CCNNGG 2 cut(s) 142, 365
BseGI GGATG 4 cut(s) 184, 408, 496, 523
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 561
BseXI GCAGC 3 cut(s) 34, 716, 719
BshFI GGCC 2 cut(s) 364, 501
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 2 cut(s) 364, 501
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 585
Bsp19I CCATGG 1 cut(s) 142
BspANI GGCC 2 cut(s) 364, 501
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 365, 540
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 709
BspPI GGATC 1 cut(s) 593
BsrI ACTGG 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 142, 365
BssMI GATC 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 646
Bst6I CTCTTC 1 cut(s) 753
BstC8I GCNNGC 3 cut(s) 226, 260, 724
BstDEI CTNAG 2 cut(s) 75, 831
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 4 cut(s) 184, 408, 496, 523
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 588
BstMBI GATC 1 cut(s) 585
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNSI RCATGY 2 cut(s) 232, 395
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 34, 716, 719
BsuRI GGCC 2 cut(s) 364, 501
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 4 cut(s) 184, 408, 496, 523
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 280, 502
BveI ACCTGC 1 cut(s) 709
Cac8I GCNNGC 3 cut(s) 226, 260, 724
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 1 cut(s) 442
Csp6I GTAC 3 cut(s) 232, 266, 642
CviAII CATG 4 cut(s) 143, 229, 352, 392
CviQI GTAC 3 cut(s) 232, 266, 642
DdeI CTNAG 2 cut(s) 75, 831
DpnI GATC 1 cut(s) 587
DpnII GATC 1 cut(s) 585
DraI TTTAAA 1 cut(s) 820
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco130I CCWWGG 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 146, 232, 355, 395
FalI AAGNNNNNCTT 6 cut(s) 179, 211, 288, 320, 792, 824
FatI CATG 4 cut(s) 142, 228, 351, 391
Fnu4HI GCNGC 3 cut(s) 23, 705, 708
FokI GGATG 4 cut(s) 191, 395, 503, 530
Fsp4HI GCNGC 3 cut(s) 23, 705, 708
FspBI CTAG 3 cut(s) 108, 209, 437
GlaI GCGC 1 cut(s) 13
GluI GCNGC 3 cut(s) 23, 705, 708
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 364, 501
HapII CCGG 1 cut(s) 367
HgaI GACGC 1 cut(s) 442
HhaI GCGC 1 cut(s) 14
Hin1II CATG 4 cut(s) 146, 232, 355, 395
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 3 cut(s) 38, 123, 827
HpaI GTTAAC 1 cut(s) 565
HpaII CCGG 1 cut(s) 367
Hpy166II GTNNAC 2 cut(s) 335, 565
Hpy188I TCNGA 7 cut(s) 99, 122, 238, 323, 457, 651, 752
Hpy188III TCNNGA 3 cut(s) 209, 386, 419
Hpy8I GTNNAC 2 cut(s) 335, 565
Hpy99I CGWCG 1 cut(s) 658
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4IV ACGT 1 cut(s) 656
HpyCH4V TGCA 4 cut(s) 85, 258, 704, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 2 cut(s) 75, 831
HpySE526I ACGT 1 cut(s) 656
Hsp92II CATG 4 cut(s) 146, 232, 355, 395
HspAI GCGC 1 cut(s) 12
KspAI GTTAAC 1 cut(s) 565
Kzo9I GATC 1 cut(s) 585
Lsp1109I GCAGC 3 cut(s) 34, 716, 719
MaeI CTAG 3 cut(s) 108, 209, 437
MaeII ACGT 1 cut(s) 656
MaeIII GTNAC 1 cut(s) 628
MalI GATC 1 cut(s) 587
MboI GATC 1 cut(s) 585
MboII GAAGA 2 cut(s) 51, 770
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 9 cut(s) 32, 79, 116, 280, 347, 357, 474, 578, 634
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 6 cut(s) 38, 205, 213, 216, 286, 688
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 6 cut(s) 279, 317, 378, 564, 717, 819
MslI CAYNNNNRTG 2 cut(s) 273, 330
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 367
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 1 cut(s) 367
NcoI CCATGG 1 cut(s) 142
NdeII GATC 1 cut(s) 585
NlaIII CATG 4 cut(s) 146, 232, 355, 395
NlaIV GGNNCC 2 cut(s) 365, 540
NmuCI GTSAC 1 cut(s) 628
NspI RCATGY 2 cut(s) 232, 395
OliI CACNNNNGTG 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 2 cut(s) 123, 827
PkrI GCNGC 3 cut(s) 24, 706, 709
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 717
PspN4I GGNNCC 2 cut(s) 365, 540
PspPI GGNCC 1 cut(s) 363
PstI CTGCAG 1 cut(s) 706
RsaI GTAC 3 cut(s) 233, 267, 643
RsaNI GTAC 3 cut(s) 232, 266, 642
RseI CAYNNNNRTG 2 cut(s) 273, 330
SaqAI TTAA 6 cut(s) 279, 317, 378, 564, 717, 819
SatI GCNGC 3 cut(s) 23, 705, 708
Sau3AI GATC 1 cut(s) 585
Sau96I GGNCC 1 cut(s) 363
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 702
SmiMI CAYNNNNRTG 2 cut(s) 273, 330
SmlI CTYRAG 2 cut(s) 185, 605
SmoI CTYRAG 2 cut(s) 185, 605
Sse9I AATT 9 cut(s) 32, 79, 116, 280, 347, 357, 474, 578, 634
SspMI CTAG 3 cut(s) 108, 209, 437
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 646
TaiI ACGT 1 cut(s) 659
TaqI TCGA 2 cut(s) 385, 825
TasI AATT 9 cut(s) 32, 79, 116, 280, 347, 357, 474, 578, 634
TatI WGTACW 2 cut(s) 231, 641
TfiI GAWTC 2 cut(s) 123, 827
Tru1I TTAA 6 cut(s) 279, 317, 378, 564, 717, 819
Tru9I TTAA 6 cut(s) 279, 317, 378, 564, 717, 819
TscAI CASTG 2 cut(s) 280, 502
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 3 cut(s) 22, 704, 707
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 7 cut(s) 179, 290, 340, 397, 630, 658, 771
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 2 cut(s) 280, 502
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 4 cut(s) 79, 116, 347, 634
XbaI TCTAGA 1 cut(s) 208
XceI RCATGY 2 cut(s) 232, 395
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 3 cut(s) 108, 209, 437
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.