Rmu_sc0011657.1_g000015

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011657.1
OG0000429
Physical Location & Seq
Forward (+)
63256 .. 64283
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011657.1_g000015.1.cds

Sequence Viewer

Length: 711 bp
atggtatattcatcttcattgttggttgatcccactgtgcaggagaatattggtggcagtcagctaggcactgcaaatcaagtgggaactataaactttcacttggaattgttgcagattcgggcaaaacgggtacatgctgatctgactgaatttgagacgattgcaaaggtaatcaaccatggcatgtcagaaaatttgttgcatgacaccatggatgtattcagggagttttttgcgctgcctccagatgacaaggcaagcttcttctctgaggaccctaacaaactctgcaggctcataactagcatcggaaattatgatagggagaatgttcatctttggcgggatgccctccgacacccttgtcatcctttagataaattcattccactttggccccagcaactgcttaaatatcaagagcatgttggcaaatgttccacccaagtgaggaaagtagctttgaacattttggagttgatcagtgaagaacttgggattgaatatgggcacttcagtgatgaacttagccaagagactgtactctcagttaattattatccaccttgcccagatccatgtttgacattaggaatgactaaacaccgtgacccaaacctcatcacaattttacttcaaggggatgtacatggccttcagagttttaagggtagggaatggattggtgtggaacctcttccgcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

236

Amino Acids

26.85

Weight (kDa)

5.4

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000429)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11330 FvH4_2g11330 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21630 FvH4_2g21772 FvH4_2g21772 FvH4_2g21773 FvH4_2g21774
malus_domestica MD05G1199100.v1.1 MD05G1200000.v1.1 MD05G1201900.v1.1 MD10G1188800.v1.1 MD10G1189600.v1.1 MD10G1189900.v1.1 MD15G1001500.v1.1
prunus_persica Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.1G354100_v2.0.a1 Prupe.8G224200_v2.0.a1 Prupe.8G225800_v2.0.a1
pyrus_communis pycom05g18530 pycom05g18630 pycom05g18650 pycom05g18870 pycom15g00070
rosa_chinensis RchiOBHm_Chr4g0407601 RchiOBHm_Chr6g0288311 RchiOBHm_Chr6g0288451 RchiOBHm_Chr6g0288461 RchiOBHm_Chr6g0288471 RchiOBHm_Chr6g0288491 RchiOBHm_Chr6g0288511 RchiOBHm_Chr6g0288521 RchiOBHm_Chr7g0188451
rosa_laevigata RLG00000004695 RLG00000008705 RLG00000010120 RLG00000012396 RLG00000012402 RLG00000012416 RLG00000017369
rosa_multiflora Rmu_co8451481.1_g000001 Rmu_co8483209.1_g000001 Rmu_sc0000952.1_g000001 Rmu_sc0001038.1_g000007 Rmu_sc0004806.1_g000002 Rmu_sc0006439.1_g000001 Rmu_sc0011657.1_g000015
rosa_roxburghii Rroxscaffold_3G00266420 Rroxscaffold_5G00334150 Rroxscaffold_5G00352210 Rroxscaffold_7G00180010 Rroxscaffold_7G00180020 Rroxscaffold_7G00180030 Rroxscaffold_7G00180040 Rroxscaffold_7G00180180
rosa_rugosa Rorug04G0080800 Rorug05G0399800 Rorug06G0195400 Rorug06G0195400 Rorug06G0195600 Rorug06G0196500 Rorug06G0196600 Rorug06G0490400
rosa_samantha Rh2BG181900 Rh2DG180700 Rh4AG145500 Rh4BG143300 Rh4CG152200 Rh6AG306700 Rh6AG308200 Rh6AG308300 Rh6AG308500 Rh6AG308600 Rh6BG312500 Rh6BG313400 Rh6BG313800 Rh6BG313900 Rh6CG321300 Rh6DG305500 Rh6DG306700 Rh6DG306800 Rh6DG306900 Rh6DG307100 Rh7AG095200 Rh7BG096700 Rh7CG097500
rosa_wichuraiana Rw4G011820 Rw6G026520 Rw6G026640 Rw6G026650 Rw7G008210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 366
AciI CCGC 2 cut(s) 346, 704
AclWI GGATC 2 cut(s) 23, 572
AcsI RAATTY 3 cut(s) 152, 196, 383
AcuI CTGAAG 2 cut(s) 502, 644
AfaI GTAC 3 cut(s) 135, 546, 651
AfiI CCNNNNNNNGG 1 cut(s) 453
AgsI TTSAA 3 cut(s) 469, 506, 641
AleI CACNNNNGTG 2 cut(s) 449, 519
AluBI AGCT 3 cut(s) 64, 264, 464
AluI AGCT 3 cut(s) 64, 264, 464
Alw26I GTCTC 2 cut(s) 152, 533
AlwI GGATC 2 cut(s) 23, 572
AlwNI CAGNNNCTG 1 cut(s) 409
AoxI GGCC 2 cut(s) 398, 655
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 3 cut(s) 152, 196, 383
Asp700I GAANNNNTTC 1 cut(s) 699
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 277, 399
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 516
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BbvI GCAGC 1 cut(s) 228
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 2 cut(s) 152, 533
BfaI CTAG 2 cut(s) 65, 306
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 277, 399
BmiI GGNNCC 3 cut(s) 279, 401, 696
BmsI GCATC 2 cut(s) 318, 340
BpmI CTGGAG 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 181, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 181, 213
BseGI GGATG 4 cut(s) 223, 355, 370, 652
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 264, 564
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 1 cut(s) 228
BseYI CCCAGC 1 cut(s) 402
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 2 cut(s) 400, 657
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 2 cut(s) 152, 533
BsmBI CGTCTC 1 cut(s) 152
BsnI GGCC 2 cut(s) 400, 657
Bsp1286I GDGCHC 1 cut(s) 516
Bsp1407I TGTACA 1 cut(s) 649
Bsp143I GATC 4 cut(s) 28, 142, 483, 577
Bsp19I CCATGG 2 cut(s) 181, 213
BspACI CCGC 2 cut(s) 346, 704
BspANI GGCC 2 cut(s) 400, 657
BspCNI CTCAG 2 cut(s) 265, 563
BspLI GGNNCC 3 cut(s) 279, 401, 696
BspMAI CTGCAG 1 cut(s) 296
BspPI GGATC 2 cut(s) 23, 572
BsrGI TGTACA 1 cut(s) 649
BssECI CCNNGG 2 cut(s) 181, 213
BssMI GATC 4 cut(s) 28, 142, 483, 577
BssT1I CCWWGG 2 cut(s) 181, 213
Bst4CI ACNGT 3 cut(s) 37, 544, 611
Bst6I CTCTTC 1 cut(s) 705
BstAUI TGTACA 1 cut(s) 649
BstC8I GCNNGC 2 cut(s) 262, 296
BstDEI CTNAG 3 cut(s) 273, 530, 550
BstDSI CCRYGG 2 cut(s) 181, 213
BstF5I GGATG 4 cut(s) 223, 355, 370, 652
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 4 cut(s) 31, 145, 486, 580
BstMAI GTCTC 2 cut(s) 152, 533
BstMBI GATC 4 cut(s) 28, 142, 483, 577
BstNSI RCATGY 3 cut(s) 140, 190, 431
BstSFI CTRYAG 1 cut(s) 292
BstSLI GKGCMC 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 2 cut(s) 400, 657
BtgI CCRYGG 2 cut(s) 181, 213
BtsCI GGATG 4 cut(s) 223, 355, 370, 652
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 4 cut(s) 33, 69, 493, 526
Cac8I GCNNGC 2 cut(s) 262, 296
CaiI CAGNNNCTG 1 cut(s) 409
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 277, 399
Csp6I GTAC 3 cut(s) 134, 545, 650
CspCI CAANNNNNGTGG 2 cut(s) 63, 98
CviAII CATG 8 cut(s) 137, 182, 187, 206, 214, 428, 582, 653
CviJI RGCY 7 cut(s) 64, 264, 298, 400, 464, 534, 657
CviKI_1 RGCY 7 cut(s) 64, 264, 298, 400, 464, 534, 657
CviQI GTAC 3 cut(s) 134, 545, 650
DdeI CTNAG 3 cut(s) 273, 530, 550
DpnI GATC 4 cut(s) 30, 144, 485, 579
DpnII GATC 4 cut(s) 28, 142, 483, 577
DrdI GACNNNNNNGTC 1 cut(s) 366
DseDI GACNNNNNNGTC 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Eco130I CCWWGG 2 cut(s) 181, 213
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 502, 644
EcoO109I RGGNCCY 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 181, 213
ErhI CCWWGG 2 cut(s) 181, 213
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 8 cut(s) 140, 185, 190, 209, 217, 431, 585, 656
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 8 cut(s) 136, 181, 186, 205, 213, 427, 581, 652
FauI CCCGC 1 cut(s) 339
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 4 cut(s) 230, 357, 362, 659
Fsp4HI GCNGC 1 cut(s) 242
FspBI CTAG 2 cut(s) 65, 306
GlaI GCGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 242
GsaI CCCAGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 2 cut(s) 400, 657
HhaI GCGC 1 cut(s) 241
Hin1II CATG 8 cut(s) 140, 185, 190, 209, 217, 431, 585, 656
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 1 cut(s) 118
Hpy188I TCNGA 6 cut(s) 147, 193, 274, 314, 359, 663
Hpy188III TCNNGA 2 cut(s) 248, 422
HpyAV CCTTC 1 cut(s) 668
HpyCH4III ACNGT 3 cut(s) 37, 544, 611
HpyCH4V TGCA 6 cut(s) 40, 74, 115, 167, 205, 294
HpyF3I CTNAG 3 cut(s) 273, 530, 550
Hsp92II CATG 8 cut(s) 140, 185, 190, 209, 217, 431, 585, 656
HspAI GCGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 4 cut(s) 28, 142, 483, 577
LpnPI CCDG 6 cut(s) 26, 211, 261, 280, 416, 588
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 2 cut(s) 318, 340
MaeI CTAG 2 cut(s) 65, 306
MaeIII GTNAC 1 cut(s) 611
MalI GATC 4 cut(s) 30, 144, 485, 579
MboI GATC 4 cut(s) 28, 142, 483, 577
MboII GAAGA 4 cut(s) 6, 259, 503, 692
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 7 cut(s) 107, 152, 196, 316, 383, 556, 630
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 6 cut(s) 255, 268, 365, 447, 632, 708
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 3 cut(s) 414, 555, 669
MslI CAYNNNNRTG 2 cut(s) 449, 519
NcoI CCATGG 2 cut(s) 181, 213
NdeII GATC 4 cut(s) 28, 142, 483, 577
NlaIII CATG 8 cut(s) 140, 185, 190, 209, 217, 431, 585, 656
NlaIV GGNNCC 3 cut(s) 279, 401, 696
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 3 cut(s) 140, 190, 431
OliI CACNNNNGTG 2 cut(s) 449, 519
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 243
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 402
PspN4I GGNNCC 3 cut(s) 279, 401, 696
PspPI GGNCC 2 cut(s) 277, 399
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 3 cut(s) 135, 546, 651
RsaNI GTAC 3 cut(s) 134, 545, 650
RseI CAYNNNNRTG 2 cut(s) 449, 519
SaqAI TTAA 3 cut(s) 414, 555, 669
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 4 cut(s) 28, 142, 483, 577
Sau96I GGNCC 2 cut(s) 277, 399
SduI GDGCHC 1 cut(s) 516
SetI ASST 7 cut(s) 66, 174, 266, 466, 571, 624, 700
SfaNI GCATC 2 cut(s) 318, 340
SfcI CTRYAG 1 cut(s) 292
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 2 cut(s) 449, 519
Sse9I AATT 7 cut(s) 107, 152, 196, 316, 383, 556, 630
SsiI CCGC 2 cut(s) 346, 704
SspI AATATT 1 cut(s) 49
SspMI CTAG 2 cut(s) 65, 306
StyI CCWWGG 2 cut(s) 181, 213
TaaI ACNGT 3 cut(s) 37, 544, 611
TasI AATT 7 cut(s) 107, 152, 196, 316, 383, 556, 630
TatI WGTACW 2 cut(s) 544, 649
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 3 cut(s) 414, 555, 669
Tru9I TTAA 3 cut(s) 414, 555, 669
TscAI CASTG 4 cut(s) 40, 76, 493, 526
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 4 cut(s) 6, 326, 376, 540
TspRI CASTG 4 cut(s) 40, 76, 493, 526
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 3 cut(s) 152, 196, 383
XceI RCATGY 3 cut(s) 140, 190, 431
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 2 cut(s) 65, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.